Cargando…

Chemical shifts in molecular solids by machine learning

Due to their strong dependence on local atonic environments, NMR chemical shifts are among the most powerful tools for strucutre elucidation of powdered solids or amorphous materials. Unfortunately, using them for structure determination depends on the ability to calculate them, which  comes at the...

Descripción completa

Detalles Bibliográficos
Autores principales: Paruzzo, Federico M., Hofstetter, Albert, Musil, Félix, De, Sandip, Ceriotti, Michele, Emsley, Lyndon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206069/
https://www.ncbi.nlm.nih.gov/pubmed/30374021
http://dx.doi.org/10.1038/s41467-018-06972-x
_version_ 1783366294049914880
author Paruzzo, Federico M.
Hofstetter, Albert
Musil, Félix
De, Sandip
Ceriotti, Michele
Emsley, Lyndon
author_facet Paruzzo, Federico M.
Hofstetter, Albert
Musil, Félix
De, Sandip
Ceriotti, Michele
Emsley, Lyndon
author_sort Paruzzo, Federico M.
collection PubMed
description Due to their strong dependence on local atonic environments, NMR chemical shifts are among the most powerful tools for strucutre elucidation of powdered solids or amorphous materials. Unfortunately, using them for structure determination depends on the ability to calculate them, which  comes at the cost of high accuracy first-principles calculations. Machine learning has recently emerged as a way to overcome the need for quantum chemical calculations, but for chemical shifts in solids it is hindered by the chemical and combinatorial space spanned by molecular solids, the strong dependency of chemical shifts on their environment, and the lack of an experimental database of shifts. We propose a machine learning method based on local environments to accurately predict chemical shifts of molecular solids and their polymorphs to within DFT accuracy. We also demonstrate that the trained model is able to determine, based on the match between experimentally measured and ML-predicted shifts, the structures of cocaine and the drug 4-[4-(2-adamantylcarbamoyl)-5-tert-butylpyrazol-1-yl]benzoic acid.
format Online
Article
Text
id pubmed-6206069
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-62060692018-10-31 Chemical shifts in molecular solids by machine learning Paruzzo, Federico M. Hofstetter, Albert Musil, Félix De, Sandip Ceriotti, Michele Emsley, Lyndon Nat Commun Article Due to their strong dependence on local atonic environments, NMR chemical shifts are among the most powerful tools for strucutre elucidation of powdered solids or amorphous materials. Unfortunately, using them for structure determination depends on the ability to calculate them, which  comes at the cost of high accuracy first-principles calculations. Machine learning has recently emerged as a way to overcome the need for quantum chemical calculations, but for chemical shifts in solids it is hindered by the chemical and combinatorial space spanned by molecular solids, the strong dependency of chemical shifts on their environment, and the lack of an experimental database of shifts. We propose a machine learning method based on local environments to accurately predict chemical shifts of molecular solids and their polymorphs to within DFT accuracy. We also demonstrate that the trained model is able to determine, based on the match between experimentally measured and ML-predicted shifts, the structures of cocaine and the drug 4-[4-(2-adamantylcarbamoyl)-5-tert-butylpyrazol-1-yl]benzoic acid. Nature Publishing Group UK 2018-10-29 /pmc/articles/PMC6206069/ /pubmed/30374021 http://dx.doi.org/10.1038/s41467-018-06972-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Paruzzo, Federico M.
Hofstetter, Albert
Musil, Félix
De, Sandip
Ceriotti, Michele
Emsley, Lyndon
Chemical shifts in molecular solids by machine learning
title Chemical shifts in molecular solids by machine learning
title_full Chemical shifts in molecular solids by machine learning
title_fullStr Chemical shifts in molecular solids by machine learning
title_full_unstemmed Chemical shifts in molecular solids by machine learning
title_short Chemical shifts in molecular solids by machine learning
title_sort chemical shifts in molecular solids by machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206069/
https://www.ncbi.nlm.nih.gov/pubmed/30374021
http://dx.doi.org/10.1038/s41467-018-06972-x
work_keys_str_mv AT paruzzofedericom chemicalshiftsinmolecularsolidsbymachinelearning
AT hofstetteralbert chemicalshiftsinmolecularsolidsbymachinelearning
AT musilfelix chemicalshiftsinmolecularsolidsbymachinelearning
AT desandip chemicalshiftsinmolecularsolidsbymachinelearning
AT ceriottimichele chemicalshiftsinmolecularsolidsbymachinelearning
AT emsleylyndon chemicalshiftsinmolecularsolidsbymachinelearning