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DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses

I extend the classic SAR, which has achieved status of ecological law and plays a critical role in global biodiversity and biogeography analyses, to general DAR (diversity–area relationship). The extension was aimed to remedy a serious application limitation of the traditional SAR that only addresse...

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Autor principal: Ma, Zhanshan (Sam)
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206192/
https://www.ncbi.nlm.nih.gov/pubmed/30397444
http://dx.doi.org/10.1002/ece3.4425
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author Ma, Zhanshan (Sam)
author_facet Ma, Zhanshan (Sam)
author_sort Ma, Zhanshan (Sam)
collection PubMed
description I extend the classic SAR, which has achieved status of ecological law and plays a critical role in global biodiversity and biogeography analyses, to general DAR (diversity–area relationship). The extension was aimed to remedy a serious application limitation of the traditional SAR that only addressed one aspect of biodiversity scaling—species richness scaling over space, but ignoring species abundance information. The extension was further inspired by a recent consensus that Hill numbers offer the most appropriate measures for alpha‐diversity and multiplicative beta‐diversity. In particular, Hill numbers are essentially a series of Renyi's entropy values weighted differently along the rare‐common‐dominant spectrum of species abundance distribution and are in the units of effective number of species (or species equivalents such as OTUs). I therefore postulate that Hill numbers should follow the same or similar law of the traditional SAR. I test the postulation with the American gut microbiome project (AGP) dataset of 1,473 healthy North American individuals. I further propose three new concepts and develop their statistical estimation formulae based on the new DAR extension, including: (i) DAR profile—z–q relationship (DAR scaling parameter z at different diversity order q), (ii) PDO (pair‐wise diversity overlap) profile—g–q relationship (PDO parameter g at order q, and (iii) MAD (maximal accrual diversity: D (max)) profile—D (max)‐q. While the classic SAR is a special case of our new DAR profile, the PDO and MAD profiles offer novel tools for analyzing biodiversity (including alpha‐diversity and beta‐diversity) and biogeography over space.
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spelling pubmed-62061922018-11-05 DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses Ma, Zhanshan (Sam) Ecol Evol Original Research I extend the classic SAR, which has achieved status of ecological law and plays a critical role in global biodiversity and biogeography analyses, to general DAR (diversity–area relationship). The extension was aimed to remedy a serious application limitation of the traditional SAR that only addressed one aspect of biodiversity scaling—species richness scaling over space, but ignoring species abundance information. The extension was further inspired by a recent consensus that Hill numbers offer the most appropriate measures for alpha‐diversity and multiplicative beta‐diversity. In particular, Hill numbers are essentially a series of Renyi's entropy values weighted differently along the rare‐common‐dominant spectrum of species abundance distribution and are in the units of effective number of species (or species equivalents such as OTUs). I therefore postulate that Hill numbers should follow the same or similar law of the traditional SAR. I test the postulation with the American gut microbiome project (AGP) dataset of 1,473 healthy North American individuals. I further propose three new concepts and develop their statistical estimation formulae based on the new DAR extension, including: (i) DAR profile—z–q relationship (DAR scaling parameter z at different diversity order q), (ii) PDO (pair‐wise diversity overlap) profile—g–q relationship (PDO parameter g at order q, and (iii) MAD (maximal accrual diversity: D (max)) profile—D (max)‐q. While the classic SAR is a special case of our new DAR profile, the PDO and MAD profiles offer novel tools for analyzing biodiversity (including alpha‐diversity and beta‐diversity) and biogeography over space. John Wiley and Sons Inc. 2018-09-25 /pmc/articles/PMC6206192/ /pubmed/30397444 http://dx.doi.org/10.1002/ece3.4425 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Ma, Zhanshan (Sam)
DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title_full DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title_fullStr DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title_full_unstemmed DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title_short DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
title_sort dar (diversity–area relationship): extending classic sar (species–area relationship) for biodiversity and biogeography analyses
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206192/
https://www.ncbi.nlm.nih.gov/pubmed/30397444
http://dx.doi.org/10.1002/ece3.4425
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