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Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance

Forest canopies create dynamic light environments in their understorey, where spectral composition changes among patterns of shade and sunflecks, and through the seasons with canopy phenology and sun angle. Plants use spectral composition as a cue to adjust their growth strategy for optimal resource...

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Autores principales: Hartikainen, Saara M., Jach, Agnieszka, Grané, Aurea, Robson, Thomas Matthew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206219/
https://www.ncbi.nlm.nih.gov/pubmed/30397459
http://dx.doi.org/10.1002/ece3.4496
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author Hartikainen, Saara M.
Jach, Agnieszka
Grané, Aurea
Robson, Thomas Matthew
author_facet Hartikainen, Saara M.
Jach, Agnieszka
Grané, Aurea
Robson, Thomas Matthew
author_sort Hartikainen, Saara M.
collection PubMed
description Forest canopies create dynamic light environments in their understorey, where spectral composition changes among patterns of shade and sunflecks, and through the seasons with canopy phenology and sun angle. Plants use spectral composition as a cue to adjust their growth strategy for optimal resource use. Quantifying the ever‐changing nature of the understorey light environment is technically challenging with respect to data collection. Thus, to capture the simultaneous variation occurring in multiple regions of the solar spectrum, we recorded spectral irradiance from forest understoreys over the wavelength range 300–800 nm using an array spectroradiometer. It is also methodologically challenging to analyze solar spectra because of their multi‐scale nature and multivariate lay‐out. To compare spectra, we therefore used a novel method termed thick pen transform (TPT), which is simple and visually interpretable. This enabled us to show that sunlight position in the forest understorey (i.e., shade, semi‐shade, or sunfleck) was the most important factor in determining shape similarity of spectral irradiance. Likewise, the contributions of stand identity and time of year could be distinguished. Spectra from sunflecks were consistently the most similar, irrespective of differences in global irradiance. On average, the degree of cross‐dependence increased with increasing scale, sometimes shifting from negative (dissimilar) to positive (similar) values. We conclude that the interplay of sunlight position, stand identity, and date cannot be ignored when quantifying and comparing spectral composition in forest understoreys. Technological advances mean that array spectroradiometers, which can record spectra contiguously over very short time intervals, are being widely adopted, not only to measure irradiance under pollution, clouds, atmospheric changes, and in biological systems, but also spectral changes at small scales in the photonics industry. We consider that TPT is an applicable method for spectral analysis in any field and can be a useful tool to analyze large datasets in general.
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spelling pubmed-62062192018-11-05 Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance Hartikainen, Saara M. Jach, Agnieszka Grané, Aurea Robson, Thomas Matthew Ecol Evol Original Research Forest canopies create dynamic light environments in their understorey, where spectral composition changes among patterns of shade and sunflecks, and through the seasons with canopy phenology and sun angle. Plants use spectral composition as a cue to adjust their growth strategy for optimal resource use. Quantifying the ever‐changing nature of the understorey light environment is technically challenging with respect to data collection. Thus, to capture the simultaneous variation occurring in multiple regions of the solar spectrum, we recorded spectral irradiance from forest understoreys over the wavelength range 300–800 nm using an array spectroradiometer. It is also methodologically challenging to analyze solar spectra because of their multi‐scale nature and multivariate lay‐out. To compare spectra, we therefore used a novel method termed thick pen transform (TPT), which is simple and visually interpretable. This enabled us to show that sunlight position in the forest understorey (i.e., shade, semi‐shade, or sunfleck) was the most important factor in determining shape similarity of spectral irradiance. Likewise, the contributions of stand identity and time of year could be distinguished. Spectra from sunflecks were consistently the most similar, irrespective of differences in global irradiance. On average, the degree of cross‐dependence increased with increasing scale, sometimes shifting from negative (dissimilar) to positive (similar) values. We conclude that the interplay of sunlight position, stand identity, and date cannot be ignored when quantifying and comparing spectral composition in forest understoreys. Technological advances mean that array spectroradiometers, which can record spectra contiguously over very short time intervals, are being widely adopted, not only to measure irradiance under pollution, clouds, atmospheric changes, and in biological systems, but also spectral changes at small scales in the photonics industry. We consider that TPT is an applicable method for spectral analysis in any field and can be a useful tool to analyze large datasets in general. John Wiley and Sons Inc. 2018-09-12 /pmc/articles/PMC6206219/ /pubmed/30397459 http://dx.doi.org/10.1002/ece3.4496 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Hartikainen, Saara M.
Jach, Agnieszka
Grané, Aurea
Robson, Thomas Matthew
Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title_full Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title_fullStr Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title_full_unstemmed Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title_short Assessing scale‐wise similarity of curves with a thick pen: As illustrated through comparisons of spectral irradiance
title_sort assessing scale‐wise similarity of curves with a thick pen: as illustrated through comparisons of spectral irradiance
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206219/
https://www.ncbi.nlm.nih.gov/pubmed/30397459
http://dx.doi.org/10.1002/ece3.4496
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