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Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data
Rhododendrons are typically known to be calcifuges that cannot grow well in lime soils. Data on lime tolerance of different taxa in Rhododendron are scarce. Habitats of naturally distributed specimens of genus Rhododendron were compiled as Chinese text-based locations from the Chinese Virtual Herbar...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206291/ https://www.ncbi.nlm.nih.gov/pubmed/30405673 http://dx.doi.org/10.3389/fpls.2018.01538 |
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author | Wang, Shusheng Leus, Leen Van Labeke, Marie-Christine Van Huylenbroeck, Johan |
author_facet | Wang, Shusheng Leus, Leen Van Labeke, Marie-Christine Van Huylenbroeck, Johan |
author_sort | Wang, Shusheng |
collection | PubMed |
description | Rhododendrons are typically known to be calcifuges that cannot grow well in lime soils. Data on lime tolerance of different taxa in Rhododendron are scarce. Habitats of naturally distributed specimens of genus Rhododendron were compiled as Chinese text-based locations from the Chinese Virtual Herbarium. The locations were then geocoded into latitude/longitude pairs and subsequently connected to soil characteristics including pH and CaCO(3) from the Harmonized World Soil Database (HWSD). Using the upper quartile values of pH > 7.2 and CaCO(3) > 2% weight in topsoil as threshold, we predicted the lime tolerant taxa. A dataset of 31,146 Rhododendron specimens including the information on taxonomy, GPS locations and soil parameters for both top- and subsoil was built. The majority of the specimens were distributed in soils with moderately acidic pH and without presence of CaCO(3). 76 taxa with potential lime tolerance were predicted out of 525 taxa. The large scale data analysis based on combined data of geocoded herbarium specimens and HWSD allows identification of valuable Rhododendron species, subspecies or botanical varieties with potential tolerance to lime soils with higher pH. The predicted tolerant taxa are valuable resources for an in-depth evaluation of lime tolerance or for further use in horticulture and breeding. |
format | Online Article Text |
id | pubmed-6206291 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-62062912018-11-07 Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data Wang, Shusheng Leus, Leen Van Labeke, Marie-Christine Van Huylenbroeck, Johan Front Plant Sci Plant Science Rhododendrons are typically known to be calcifuges that cannot grow well in lime soils. Data on lime tolerance of different taxa in Rhododendron are scarce. Habitats of naturally distributed specimens of genus Rhododendron were compiled as Chinese text-based locations from the Chinese Virtual Herbarium. The locations were then geocoded into latitude/longitude pairs and subsequently connected to soil characteristics including pH and CaCO(3) from the Harmonized World Soil Database (HWSD). Using the upper quartile values of pH > 7.2 and CaCO(3) > 2% weight in topsoil as threshold, we predicted the lime tolerant taxa. A dataset of 31,146 Rhododendron specimens including the information on taxonomy, GPS locations and soil parameters for both top- and subsoil was built. The majority of the specimens were distributed in soils with moderately acidic pH and without presence of CaCO(3). 76 taxa with potential lime tolerance were predicted out of 525 taxa. The large scale data analysis based on combined data of geocoded herbarium specimens and HWSD allows identification of valuable Rhododendron species, subspecies or botanical varieties with potential tolerance to lime soils with higher pH. The predicted tolerant taxa are valuable resources for an in-depth evaluation of lime tolerance or for further use in horticulture and breeding. Frontiers Media S.A. 2018-10-23 /pmc/articles/PMC6206291/ /pubmed/30405673 http://dx.doi.org/10.3389/fpls.2018.01538 Text en Copyright © 2018 Wang, Leus, Van Labeke and Van Huylenbroeck. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Wang, Shusheng Leus, Leen Van Labeke, Marie-Christine Van Huylenbroeck, Johan Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title | Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title_full | Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title_fullStr | Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title_full_unstemmed | Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title_short | Prediction of Lime Tolerance in Rhododendron Based on Herbarium Specimen and Geochemical Data |
title_sort | prediction of lime tolerance in rhododendron based on herbarium specimen and geochemical data |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206291/ https://www.ncbi.nlm.nih.gov/pubmed/30405673 http://dx.doi.org/10.3389/fpls.2018.01538 |
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