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Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)

The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision)...

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Autores principales: Fordham, Barry G., Aze, Tracy, Haller, Christian, Zehady, Abdullah Khan, Pearson, Paul N., Ogg, James G., Wade, Bridget S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6209145/
https://www.ncbi.nlm.nih.gov/pubmed/30379910
http://dx.doi.org/10.1371/journal.pone.0204625
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author Fordham, Barry G.
Aze, Tracy
Haller, Christian
Zehady, Abdullah Khan
Pearson, Paul N.
Ogg, James G.
Wade, Bridget S.
author_facet Fordham, Barry G.
Aze, Tracy
Haller, Christian
Zehady, Abdullah Khan
Pearson, Paul N.
Ogg, James G.
Wade, Bridget S.
author_sort Fordham, Barry G.
collection PubMed
description The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others’ dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor–descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as mutual listings between morphospecies and lineages which ease the tracing of their interrelated contents. The elaboration of the original dataset has been captured in a relational database, which can be considered a resource in itself, and, through queries and programming, serves to generate the TimeScale Creator datapacks.
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spelling pubmed-62091452018-11-19 Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011) Fordham, Barry G. Aze, Tracy Haller, Christian Zehady, Abdullah Khan Pearson, Paul N. Ogg, James G. Wade, Bridget S. PLoS One Research Article The unique macroevolutionary dataset of Aze & others has been transferred onto the TimeScale Creator visualisation platform while, as much as practicable, preserving the original unrevised content of its morphospecies and lineage evolutionary trees. This is a “Corrected Version” (not a revision), which can serve as an on-going historical case example because it is now updatable with future time scales. Both macroevolutionary and biostratigraphic communities are now equipped with an enduring phylogenetic database of Cenozoic macroperforate planktonic foraminiferal morphospecies and lineages for which both graphics and content can be visualised together. Key to maintaining the currency of the trees has been specification of time scales for sources of stratigraphic ranges; these scales then locate the range dates within the calibration series. Some ranges or their sources have undergone mostly minor corrections or amendments. Links between lineage and morphospecies trees have been introduced to improve consistency and transparency in timing within the trees. Also, Aze & others’ dual employment of morphospecies and lineage concepts is further elaborated here, given misunderstandings that have ensued. Features displayed on the trees include options for line styles for additional categories for range extensions or degrees of support for ancestor–descendant proposals; these have been applied to a small number of instances as an encouragement to capture more nuanced data in the future. In addition to labeling of eco- and morpho-groups on both trees, genus labels can be attached to the morphospecies tree to warn of polyphyletic morphogenera, and the lineage codes have been decoded to ease their recognition. However, it is the mouse-over pop-ups that provide the greatest opportunity to embed supporting information in the trees. They include details for stratigraphic ranges and their recalibration steps, positions relative to the standard planktonic-foraminiferal zonation, and applications as datums, as well as mutual listings between morphospecies and lineages which ease the tracing of their interrelated contents. The elaboration of the original dataset has been captured in a relational database, which can be considered a resource in itself, and, through queries and programming, serves to generate the TimeScale Creator datapacks. Public Library of Science 2018-10-31 /pmc/articles/PMC6209145/ /pubmed/30379910 http://dx.doi.org/10.1371/journal.pone.0204625 Text en © 2018 Fordham et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Fordham, Barry G.
Aze, Tracy
Haller, Christian
Zehady, Abdullah Khan
Pearson, Paul N.
Ogg, James G.
Wade, Bridget S.
Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title_full Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title_fullStr Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title_full_unstemmed Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title_short Future-proofing the Cenozoic macroperforate planktonic foraminifera phylogeny of Aze & others (2011)
title_sort future-proofing the cenozoic macroperforate planktonic foraminifera phylogeny of aze & others (2011)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6209145/
https://www.ncbi.nlm.nih.gov/pubmed/30379910
http://dx.doi.org/10.1371/journal.pone.0204625
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