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Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211410/ https://www.ncbi.nlm.nih.gov/pubmed/30384861 http://dx.doi.org/10.1186/s40659-018-0193-4 |
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author | Garcia-Gonzales, Rolando Pico-Mendoza, José Quiroz, Karla Carrasco, Basilio Cáceres, Pablo Chong-Perez, Borys Pino, Hugo Seiltgens, Marjorie Greck, Eglis Caligari, Peter D. S. |
author_facet | Garcia-Gonzales, Rolando Pico-Mendoza, José Quiroz, Karla Carrasco, Basilio Cáceres, Pablo Chong-Perez, Borys Pino, Hugo Seiltgens, Marjorie Greck, Eglis Caligari, Peter D. S. |
author_sort | Garcia-Gonzales, Rolando |
collection | PubMed |
description | BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus. |
format | Online Article Text |
id | pubmed-6211410 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-62114102018-11-08 Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) Garcia-Gonzales, Rolando Pico-Mendoza, José Quiroz, Karla Carrasco, Basilio Cáceres, Pablo Chong-Perez, Borys Pino, Hugo Seiltgens, Marjorie Greck, Eglis Caligari, Peter D. S. Biol Res Short Report BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus. BioMed Central 2018-11-01 /pmc/articles/PMC6211410/ /pubmed/30384861 http://dx.doi.org/10.1186/s40659-018-0193-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Report Garcia-Gonzales, Rolando Pico-Mendoza, José Quiroz, Karla Carrasco, Basilio Cáceres, Pablo Chong-Perez, Borys Pino, Hugo Seiltgens, Marjorie Greck, Eglis Caligari, Peter D. S. Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title | Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title_full | Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title_fullStr | Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title_full_unstemmed | Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title_short | Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) |
title_sort | development and characterization of microsatellite markers in gaultheria pumila lf. (ericaceae) |
topic | Short Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211410/ https://www.ncbi.nlm.nih.gov/pubmed/30384861 http://dx.doi.org/10.1186/s40659-018-0193-4 |
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