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Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)

BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different...

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Autores principales: Garcia-Gonzales, Rolando, Pico-Mendoza, José, Quiroz, Karla, Carrasco, Basilio, Cáceres, Pablo, Chong-Perez, Borys, Pino, Hugo, Seiltgens, Marjorie, Greck, Eglis, Caligari, Peter D. S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211410/
https://www.ncbi.nlm.nih.gov/pubmed/30384861
http://dx.doi.org/10.1186/s40659-018-0193-4
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author Garcia-Gonzales, Rolando
Pico-Mendoza, José
Quiroz, Karla
Carrasco, Basilio
Cáceres, Pablo
Chong-Perez, Borys
Pino, Hugo
Seiltgens, Marjorie
Greck, Eglis
Caligari, Peter D. S.
author_facet Garcia-Gonzales, Rolando
Pico-Mendoza, José
Quiroz, Karla
Carrasco, Basilio
Cáceres, Pablo
Chong-Perez, Borys
Pino, Hugo
Seiltgens, Marjorie
Greck, Eglis
Caligari, Peter D. S.
author_sort Garcia-Gonzales, Rolando
collection PubMed
description BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus.
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spelling pubmed-62114102018-11-08 Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae) Garcia-Gonzales, Rolando Pico-Mendoza, José Quiroz, Karla Carrasco, Basilio Cáceres, Pablo Chong-Perez, Borys Pino, Hugo Seiltgens, Marjorie Greck, Eglis Caligari, Peter D. S. Biol Res Short Report BACKGROUND: Polymorphic microsatellite markers were developed for Gaultheria pumila (Ericaceae) to evaluate genetic diversity and population structure within its native range in Chile. This is a very important Ericaceae endemic to Chile with a large commercial potential. Its resistance to different abiotic conditions makes it a valuable target for genetic improvement. RESULTS: Ten polymorphic simple sequence repeat (SSR) loci were isolated from Gaultheria pumila using new-generation 454 FLX Titanium pyrosequencing technology. The mean number of alleles per locus ranged from 2 to 4. Observed and expected heterozygosity ranged from 0.00 to 1.0 and 0.00 to 0.64, respectively. CONCLUSIONS: From 10 SSR markers developed for G. pumila, 9 markers are promising candidates for analyzing genetic variation within or between natural populations of G. pumila and other species from the same genus. BioMed Central 2018-11-01 /pmc/articles/PMC6211410/ /pubmed/30384861 http://dx.doi.org/10.1186/s40659-018-0193-4 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Report
Garcia-Gonzales, Rolando
Pico-Mendoza, José
Quiroz, Karla
Carrasco, Basilio
Cáceres, Pablo
Chong-Perez, Borys
Pino, Hugo
Seiltgens, Marjorie
Greck, Eglis
Caligari, Peter D. S.
Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title_full Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title_fullStr Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title_full_unstemmed Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title_short Development and characterization of microsatellite markers in Gaultheria pumila Lf. (Ericaceae)
title_sort development and characterization of microsatellite markers in gaultheria pumila lf. (ericaceae)
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211410/
https://www.ncbi.nlm.nih.gov/pubmed/30384861
http://dx.doi.org/10.1186/s40659-018-0193-4
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