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Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole

This paper reports on the polymorphism of 2-propyl-1H-benzimidazole (2PrBzIm) induced by temperature change. Upon heating, an irreversible reconstructive-type phase transition at T = 384 K from the ordered form I (P2(1)2(1)2(1)) to a new polymorph, form II (HT) (Pcam), was observed. The structural t...

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Autores principales: Zuñiga, Fco. Javier, Cruz-Cabeza, Aurora J., Aretxabaleta, Xabier M., de la Pinta, Noelia, Breczewski, Tomasz, Quesada-Moreno, María Mar, Avilés-Moreno, Juan Ramón, López-González, Juan Jesús, Claramunt, Rosa M., Elguero, Jose
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211527/
https://www.ncbi.nlm.nih.gov/pubmed/30443355
http://dx.doi.org/10.1107/S2052252518011685
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author Zuñiga, Fco. Javier
Cruz-Cabeza, Aurora J.
Aretxabaleta, Xabier M.
de la Pinta, Noelia
Breczewski, Tomasz
Quesada-Moreno, María Mar
Avilés-Moreno, Juan Ramón
López-González, Juan Jesús
Claramunt, Rosa M.
Elguero, Jose
author_facet Zuñiga, Fco. Javier
Cruz-Cabeza, Aurora J.
Aretxabaleta, Xabier M.
de la Pinta, Noelia
Breczewski, Tomasz
Quesada-Moreno, María Mar
Avilés-Moreno, Juan Ramón
López-González, Juan Jesús
Claramunt, Rosa M.
Elguero, Jose
author_sort Zuñiga, Fco. Javier
collection PubMed
description This paper reports on the polymorphism of 2-propyl-1H-benzimidazole (2PrBzIm) induced by temperature change. Upon heating, an irreversible reconstructive-type phase transition at T = 384 K from the ordered form I (P2(1)2(1)2(1)) to a new polymorph, form II (HT) (Pcam), was observed. The structural transformation between forms I and II involves significant changes in the crystal packing, as well as a key conformational variation around the propyl chain of the molecule. After the first irreversible phase transition, the II (HT) form undergoes two further (reversible) phase transitions upon cooling at 361 K (II (RT)) and 181 K (II (LT)). All three phases (forms II (HT), II (RT) and II (LT)) have almost identical crystal packing and, given the reversibility of the conversions as a function of temperature, they are referred to as form II temperature phases. They differ, however, with respect to conformational variations around the propyl chain of 2PrBzIm. Energy calculations of the gas-phase conformational energy landscape of this compound about its flexible bonds allowed us to classify the observed conformational variations of all forms into changes and adjustments of conformers. This reveals that forms I and II are related by conformational change, and that two of the form II phases (HT and RT) are related by conformational adjustment, whilst the other two (RT and LT) are related by conformational change. We introduce the term ‘conformational phases’ for different crystal phases with almost identical packing but showing changes in conformation.
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spelling pubmed-62115272018-11-15 Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole Zuñiga, Fco. Javier Cruz-Cabeza, Aurora J. Aretxabaleta, Xabier M. de la Pinta, Noelia Breczewski, Tomasz Quesada-Moreno, María Mar Avilés-Moreno, Juan Ramón López-González, Juan Jesús Claramunt, Rosa M. Elguero, Jose IUCrJ Research Papers This paper reports on the polymorphism of 2-propyl-1H-benzimidazole (2PrBzIm) induced by temperature change. Upon heating, an irreversible reconstructive-type phase transition at T = 384 K from the ordered form I (P2(1)2(1)2(1)) to a new polymorph, form II (HT) (Pcam), was observed. The structural transformation between forms I and II involves significant changes in the crystal packing, as well as a key conformational variation around the propyl chain of the molecule. After the first irreversible phase transition, the II (HT) form undergoes two further (reversible) phase transitions upon cooling at 361 K (II (RT)) and 181 K (II (LT)). All three phases (forms II (HT), II (RT) and II (LT)) have almost identical crystal packing and, given the reversibility of the conversions as a function of temperature, they are referred to as form II temperature phases. They differ, however, with respect to conformational variations around the propyl chain of 2PrBzIm. Energy calculations of the gas-phase conformational energy landscape of this compound about its flexible bonds allowed us to classify the observed conformational variations of all forms into changes and adjustments of conformers. This reveals that forms I and II are related by conformational change, and that two of the form II phases (HT and RT) are related by conformational adjustment, whilst the other two (RT and LT) are related by conformational change. We introduce the term ‘conformational phases’ for different crystal phases with almost identical packing but showing changes in conformation. International Union of Crystallography 2018-09-14 /pmc/articles/PMC6211527/ /pubmed/30443355 http://dx.doi.org/10.1107/S2052252518011685 Text en © Fco. Javier Zuñiga et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Zuñiga, Fco. Javier
Cruz-Cabeza, Aurora J.
Aretxabaleta, Xabier M.
de la Pinta, Noelia
Breczewski, Tomasz
Quesada-Moreno, María Mar
Avilés-Moreno, Juan Ramón
López-González, Juan Jesús
Claramunt, Rosa M.
Elguero, Jose
Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title_full Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title_fullStr Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title_full_unstemmed Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title_short Conformational aspects of polymorphs and phases of 2-propyl-1H-benzimidazole
title_sort conformational aspects of polymorphs and phases of 2-propyl-1h-benzimidazole
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6211527/
https://www.ncbi.nlm.nih.gov/pubmed/30443355
http://dx.doi.org/10.1107/S2052252518011685
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