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Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients

Circulating lncRNAs have attracted considerable attention as potential noninvasive biomarkers for diagnosing cancers. RT‐qPCR is the canonical technique for detecting circulating RNA and depends largely on stable reference genes for data normalization. However, no systematic evaluation of reference...

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Autores principales: Iempridee, Tawin, Wiwithaphon, Suphachai, Piboonprai, Kitiya, Pratedrat, Pornpitra, Khumkhrong, Phattharachanok, Japrung, Deanpen, Temisak, Sasithon, Laiwejpithaya, Somsak, Chaopotong, Pattama, Dharakul, Tararaj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6212646/
https://www.ncbi.nlm.nih.gov/pubmed/30410863
http://dx.doi.org/10.1002/2211-5463.12523
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author Iempridee, Tawin
Wiwithaphon, Suphachai
Piboonprai, Kitiya
Pratedrat, Pornpitra
Khumkhrong, Phattharachanok
Japrung, Deanpen
Temisak, Sasithon
Laiwejpithaya, Somsak
Chaopotong, Pattama
Dharakul, Tararaj
author_facet Iempridee, Tawin
Wiwithaphon, Suphachai
Piboonprai, Kitiya
Pratedrat, Pornpitra
Khumkhrong, Phattharachanok
Japrung, Deanpen
Temisak, Sasithon
Laiwejpithaya, Somsak
Chaopotong, Pattama
Dharakul, Tararaj
author_sort Iempridee, Tawin
collection PubMed
description Circulating lncRNAs have attracted considerable attention as potential noninvasive biomarkers for diagnosing cancers. RT‐qPCR is the canonical technique for detecting circulating RNA and depends largely on stable reference genes for data normalization. However, no systematic evaluation of reference genes for serum lncRNA has been reported for cervical cancer. Here, we profiled and validated lncRNA expression from serum of cervical cancer patients and controls using microarrays and RT‐qPCR. We identified lncRNA RP11‐204K16.1, XLOC_012542, and U6 small nuclear RNA as the most stable reference genes based on geNorm, NormFinder, BestKeeper, delta Ct, and RefFinder. These genes were suitable also for samples from different age groups or with hemolysis. Additionally, we discovered lncRNA AC017078.1 and XLOC_011152 as candidate biomarkers, whose expression was down‐regulated in cervical cancer. Our findings could aid research on circulating lncRNA and the discovery of blood‐based biomarkers for cervical cancer diagnosis.
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spelling pubmed-62126462018-11-08 Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients Iempridee, Tawin Wiwithaphon, Suphachai Piboonprai, Kitiya Pratedrat, Pornpitra Khumkhrong, Phattharachanok Japrung, Deanpen Temisak, Sasithon Laiwejpithaya, Somsak Chaopotong, Pattama Dharakul, Tararaj FEBS Open Bio Research Articles Circulating lncRNAs have attracted considerable attention as potential noninvasive biomarkers for diagnosing cancers. RT‐qPCR is the canonical technique for detecting circulating RNA and depends largely on stable reference genes for data normalization. However, no systematic evaluation of reference genes for serum lncRNA has been reported for cervical cancer. Here, we profiled and validated lncRNA expression from serum of cervical cancer patients and controls using microarrays and RT‐qPCR. We identified lncRNA RP11‐204K16.1, XLOC_012542, and U6 small nuclear RNA as the most stable reference genes based on geNorm, NormFinder, BestKeeper, delta Ct, and RefFinder. These genes were suitable also for samples from different age groups or with hemolysis. Additionally, we discovered lncRNA AC017078.1 and XLOC_011152 as candidate biomarkers, whose expression was down‐regulated in cervical cancer. Our findings could aid research on circulating lncRNA and the discovery of blood‐based biomarkers for cervical cancer diagnosis. John Wiley and Sons Inc. 2018-09-28 /pmc/articles/PMC6212646/ /pubmed/30410863 http://dx.doi.org/10.1002/2211-5463.12523 Text en © 2018 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Iempridee, Tawin
Wiwithaphon, Suphachai
Piboonprai, Kitiya
Pratedrat, Pornpitra
Khumkhrong, Phattharachanok
Japrung, Deanpen
Temisak, Sasithon
Laiwejpithaya, Somsak
Chaopotong, Pattama
Dharakul, Tararaj
Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title_full Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title_fullStr Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title_full_unstemmed Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title_short Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients
title_sort identification of reference genes for circulating long noncoding rna analysis in serum of cervical cancer patients
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6212646/
https://www.ncbi.nlm.nih.gov/pubmed/30410863
http://dx.doi.org/10.1002/2211-5463.12523
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