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Time to Harmonize Dengue Nomenclature and Classification

Dengue virus (DENV) is estimated to cause 390 million infections per year worldwide. A quarter of these infections manifest clinically and are associated with a morbidity and mortality that put a significant burden on the affected regions. Reports of increased frequency, intensity, and extended geog...

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Autores principales: Cuypers, Lize, Libin, Pieter J. K., Simmonds, Peter, Nowé, Ann, Muñoz-Jordán, Jorge, Alcantara, Luiz Carlos Junior, Vandamme, Anne-Mieke, Santiago, Gilberto A., Theys, Kristof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213058/
https://www.ncbi.nlm.nih.gov/pubmed/30340326
http://dx.doi.org/10.3390/v10100569
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author Cuypers, Lize
Libin, Pieter J. K.
Simmonds, Peter
Nowé, Ann
Muñoz-Jordán, Jorge
Alcantara, Luiz Carlos Junior
Vandamme, Anne-Mieke
Santiago, Gilberto A.
Theys, Kristof
author_facet Cuypers, Lize
Libin, Pieter J. K.
Simmonds, Peter
Nowé, Ann
Muñoz-Jordán, Jorge
Alcantara, Luiz Carlos Junior
Vandamme, Anne-Mieke
Santiago, Gilberto A.
Theys, Kristof
author_sort Cuypers, Lize
collection PubMed
description Dengue virus (DENV) is estimated to cause 390 million infections per year worldwide. A quarter of these infections manifest clinically and are associated with a morbidity and mortality that put a significant burden on the affected regions. Reports of increased frequency, intensity, and extended geographical range of outbreaks highlight the virus’s ongoing global spread. Persistent transmission in endemic areas and the emergence in territories formerly devoid of transmission have shaped DENV’s current genetic diversity and divergence. This genetic layout is hierarchically organized in serotypes, genotypes, and sub-genotypic clades. While serotypes are well defined, the genotype nomenclature and classification system lack consistency, which complicates a broader analysis of their clinical and epidemiological characteristics. We identify five key challenges: (1) Currently, there is no formal definition of a DENV genotype; (2) Two different nomenclature systems are used in parallel, which causes significant confusion; (3) A standardized classification procedure is lacking so far; (4) No formal definition of sub-genotypic clades is in place; (5) There is no consensus on how to report antigenic diversity. Therefore, we believe that the time is right to re-evaluate DENV genetic diversity in an essential effort to provide harmonization across DENV studies.
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spelling pubmed-62130582018-11-09 Time to Harmonize Dengue Nomenclature and Classification Cuypers, Lize Libin, Pieter J. K. Simmonds, Peter Nowé, Ann Muñoz-Jordán, Jorge Alcantara, Luiz Carlos Junior Vandamme, Anne-Mieke Santiago, Gilberto A. Theys, Kristof Viruses Communication Dengue virus (DENV) is estimated to cause 390 million infections per year worldwide. A quarter of these infections manifest clinically and are associated with a morbidity and mortality that put a significant burden on the affected regions. Reports of increased frequency, intensity, and extended geographical range of outbreaks highlight the virus’s ongoing global spread. Persistent transmission in endemic areas and the emergence in territories formerly devoid of transmission have shaped DENV’s current genetic diversity and divergence. This genetic layout is hierarchically organized in serotypes, genotypes, and sub-genotypic clades. While serotypes are well defined, the genotype nomenclature and classification system lack consistency, which complicates a broader analysis of their clinical and epidemiological characteristics. We identify five key challenges: (1) Currently, there is no formal definition of a DENV genotype; (2) Two different nomenclature systems are used in parallel, which causes significant confusion; (3) A standardized classification procedure is lacking so far; (4) No formal definition of sub-genotypic clades is in place; (5) There is no consensus on how to report antigenic diversity. Therefore, we believe that the time is right to re-evaluate DENV genetic diversity in an essential effort to provide harmonization across DENV studies. MDPI 2018-10-18 /pmc/articles/PMC6213058/ /pubmed/30340326 http://dx.doi.org/10.3390/v10100569 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Communication
Cuypers, Lize
Libin, Pieter J. K.
Simmonds, Peter
Nowé, Ann
Muñoz-Jordán, Jorge
Alcantara, Luiz Carlos Junior
Vandamme, Anne-Mieke
Santiago, Gilberto A.
Theys, Kristof
Time to Harmonize Dengue Nomenclature and Classification
title Time to Harmonize Dengue Nomenclature and Classification
title_full Time to Harmonize Dengue Nomenclature and Classification
title_fullStr Time to Harmonize Dengue Nomenclature and Classification
title_full_unstemmed Time to Harmonize Dengue Nomenclature and Classification
title_short Time to Harmonize Dengue Nomenclature and Classification
title_sort time to harmonize dengue nomenclature and classification
topic Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213058/
https://www.ncbi.nlm.nih.gov/pubmed/30340326
http://dx.doi.org/10.3390/v10100569
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