Cargando…

Advances in DNA Barcoding of Toxic Marine Organisms

There are more than 200,000 marine species worldwide. These include many important economic species, such as large yellow croaker, ribbonfish, tuna, and salmon, but also many potentially toxic species, such as blue-green algae, diatoms, cnidarians, ctenophores, Nassarius spp., and pufferfish. Howeve...

Descripción completa

Detalles Bibliográficos
Autores principales: Gong, Shaohua, Ding, Yanfei, Wang, Yi, Jiang, Guangze, Zhu, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213214/
https://www.ncbi.nlm.nih.gov/pubmed/30261656
http://dx.doi.org/10.3390/ijms19102931
_version_ 1783367717998297088
author Gong, Shaohua
Ding, Yanfei
Wang, Yi
Jiang, Guangze
Zhu, Cheng
author_facet Gong, Shaohua
Ding, Yanfei
Wang, Yi
Jiang, Guangze
Zhu, Cheng
author_sort Gong, Shaohua
collection PubMed
description There are more than 200,000 marine species worldwide. These include many important economic species, such as large yellow croaker, ribbonfish, tuna, and salmon, but also many potentially toxic species, such as blue-green algae, diatoms, cnidarians, ctenophores, Nassarius spp., and pufferfish. However, some edible and toxic species may look similar, and the correct identification of marine species is thus a major issue. The failure of traditional classification methods in certain species has promoted the use of DNA barcoding, which uses short, standard DNA fragments to assist with species identification. In this review, we summarize recent advances in DNA barcoding of toxic marine species such as jellyfish and pufferfish, using genes including cytochrome oxidase I gene (COI), cytochrome b gene (cytb), 16S rDNA, internal transcribed spacer (ITS), and Ribulose-1,5-bisphosphate carboxylase oxygenase gene (rbcL). We also discuss the application of this technique for improving the identification of marine species. The use of DNA barcoding can benefit the studies of biological diversity, biogeography, food safety, and the detection of both invasive and new species. However, the technique has limitations, particularly for the analysis of complex objects and the selection of standard DNA barcodes. The development of high-throughput methods may offer solutions to some of these issues.
format Online
Article
Text
id pubmed-6213214
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-62132142018-11-14 Advances in DNA Barcoding of Toxic Marine Organisms Gong, Shaohua Ding, Yanfei Wang, Yi Jiang, Guangze Zhu, Cheng Int J Mol Sci Review There are more than 200,000 marine species worldwide. These include many important economic species, such as large yellow croaker, ribbonfish, tuna, and salmon, but also many potentially toxic species, such as blue-green algae, diatoms, cnidarians, ctenophores, Nassarius spp., and pufferfish. However, some edible and toxic species may look similar, and the correct identification of marine species is thus a major issue. The failure of traditional classification methods in certain species has promoted the use of DNA barcoding, which uses short, standard DNA fragments to assist with species identification. In this review, we summarize recent advances in DNA barcoding of toxic marine species such as jellyfish and pufferfish, using genes including cytochrome oxidase I gene (COI), cytochrome b gene (cytb), 16S rDNA, internal transcribed spacer (ITS), and Ribulose-1,5-bisphosphate carboxylase oxygenase gene (rbcL). We also discuss the application of this technique for improving the identification of marine species. The use of DNA barcoding can benefit the studies of biological diversity, biogeography, food safety, and the detection of both invasive and new species. However, the technique has limitations, particularly for the analysis of complex objects and the selection of standard DNA barcodes. The development of high-throughput methods may offer solutions to some of these issues. MDPI 2018-09-26 /pmc/articles/PMC6213214/ /pubmed/30261656 http://dx.doi.org/10.3390/ijms19102931 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Gong, Shaohua
Ding, Yanfei
Wang, Yi
Jiang, Guangze
Zhu, Cheng
Advances in DNA Barcoding of Toxic Marine Organisms
title Advances in DNA Barcoding of Toxic Marine Organisms
title_full Advances in DNA Barcoding of Toxic Marine Organisms
title_fullStr Advances in DNA Barcoding of Toxic Marine Organisms
title_full_unstemmed Advances in DNA Barcoding of Toxic Marine Organisms
title_short Advances in DNA Barcoding of Toxic Marine Organisms
title_sort advances in dna barcoding of toxic marine organisms
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213214/
https://www.ncbi.nlm.nih.gov/pubmed/30261656
http://dx.doi.org/10.3390/ijms19102931
work_keys_str_mv AT gongshaohua advancesindnabarcodingoftoxicmarineorganisms
AT dingyanfei advancesindnabarcodingoftoxicmarineorganisms
AT wangyi advancesindnabarcodingoftoxicmarineorganisms
AT jiangguangze advancesindnabarcodingoftoxicmarineorganisms
AT zhucheng advancesindnabarcodingoftoxicmarineorganisms