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Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
The STARGazer data-processing software is used for neutron time-of-flight (TOF) single-crystal diffraction data collected using the IBARAKI Biological Crystal Diffractometer (iBIX) at the Japan Proton Accelerator Research Complex (J-PARC). This software creates hkl intensity data from three-dimensio...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213574/ https://www.ncbi.nlm.nih.gov/pubmed/30387763 http://dx.doi.org/10.1107/S2059798318012081 |
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author | Yano, Naomine Yamada, Taro Hosoya, Takaaki Ohhara, Takashi Tanaka, Ichiro Niimura, Nobuo Kusaka, Katsuhiro |
author_facet | Yano, Naomine Yamada, Taro Hosoya, Takaaki Ohhara, Takashi Tanaka, Ichiro Niimura, Nobuo Kusaka, Katsuhiro |
author_sort | Yano, Naomine |
collection | PubMed |
description | The STARGazer data-processing software is used for neutron time-of-flight (TOF) single-crystal diffraction data collected using the IBARAKI Biological Crystal Diffractometer (iBIX) at the Japan Proton Accelerator Research Complex (J-PARC). This software creates hkl intensity data from three-dimensional (x, y, TOF) diffraction data. STARGazer is composed of a data-processing component and a data-visualization component. The former is used to calculate the hkl intensity data. The latter displays the three-dimensional diffraction data with searched or predicted peak positions and is used to determine and confirm integration regions. STARGazer has been developed to make it easier to use and to obtain more accurate intensity data. For example, a profile-fitting method for peak integration was developed and the data statistics were improved. STARGazer and its manual, containing installation and data-processing components, have been prepared and provided to iBIX users. This article describes the status of the STARGazer data-processing software and its data-processing algorithms. |
format | Online Article Text |
id | pubmed-6213574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-62135742018-11-15 Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer Yano, Naomine Yamada, Taro Hosoya, Takaaki Ohhara, Takashi Tanaka, Ichiro Niimura, Nobuo Kusaka, Katsuhiro Acta Crystallogr D Struct Biol Research Papers The STARGazer data-processing software is used for neutron time-of-flight (TOF) single-crystal diffraction data collected using the IBARAKI Biological Crystal Diffractometer (iBIX) at the Japan Proton Accelerator Research Complex (J-PARC). This software creates hkl intensity data from three-dimensional (x, y, TOF) diffraction data. STARGazer is composed of a data-processing component and a data-visualization component. The former is used to calculate the hkl intensity data. The latter displays the three-dimensional diffraction data with searched or predicted peak positions and is used to determine and confirm integration regions. STARGazer has been developed to make it easier to use and to obtain more accurate intensity data. For example, a profile-fitting method for peak integration was developed and the data statistics were improved. STARGazer and its manual, containing installation and data-processing components, have been prepared and provided to iBIX users. This article describes the status of the STARGazer data-processing software and its data-processing algorithms. International Union of Crystallography 2018-10-29 /pmc/articles/PMC6213574/ /pubmed/30387763 http://dx.doi.org/10.1107/S2059798318012081 Text en © Yano et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Yano, Naomine Yamada, Taro Hosoya, Takaaki Ohhara, Takashi Tanaka, Ichiro Niimura, Nobuo Kusaka, Katsuhiro Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer |
title | Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
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title_full | Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
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title_fullStr | Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
|
title_full_unstemmed | Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
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title_short | Status of the neutron time-of-flight single-crystal diffraction data-processing software STARGazer
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title_sort | status of the neutron time-of-flight single-crystal diffraction data-processing software stargazer |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213574/ https://www.ncbi.nlm.nih.gov/pubmed/30387763 http://dx.doi.org/10.1107/S2059798318012081 |
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