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Identifying network structure similarity using spectral graph theory
Most real networks are too large or they are not available for real time analysis. Therefore, in practice, decisions are made based on partial information about the ground truth network. It is of great interest to have metrics to determine if an inferred network (the partial information network) is...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214265/ https://www.ncbi.nlm.nih.gov/pubmed/30839726 http://dx.doi.org/10.1007/s41109-017-0042-3 |
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author | Gera, Ralucca Alonso, L. Crawford, Brian House, Jeffrey Mendez-Bermudez, J. A. Knuth, Thomas Miller, Ryan |
author_facet | Gera, Ralucca Alonso, L. Crawford, Brian House, Jeffrey Mendez-Bermudez, J. A. Knuth, Thomas Miller, Ryan |
author_sort | Gera, Ralucca |
collection | PubMed |
description | Most real networks are too large or they are not available for real time analysis. Therefore, in practice, decisions are made based on partial information about the ground truth network. It is of great interest to have metrics to determine if an inferred network (the partial information network) is similar to the ground truth. In this paper we develop a test for similarity between the inferred and the true network. Our research utilizes a network visualization tool, which systematically discovers a network, producing a sequence of snapshots of the network. We introduce and test our metric on the consecutive snapshots of a network, and against the ground truth. To test the scalability of our metric we use a random matrix theory approach while discovering Erdös-Rényi graphs. This scaling analysis allows us to make predictions about the performance of the discovery process. |
format | Online Article Text |
id | pubmed-6214265 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-62142652018-11-13 Identifying network structure similarity using spectral graph theory Gera, Ralucca Alonso, L. Crawford, Brian House, Jeffrey Mendez-Bermudez, J. A. Knuth, Thomas Miller, Ryan Appl Netw Sci Research Most real networks are too large or they are not available for real time analysis. Therefore, in practice, decisions are made based on partial information about the ground truth network. It is of great interest to have metrics to determine if an inferred network (the partial information network) is similar to the ground truth. In this paper we develop a test for similarity between the inferred and the true network. Our research utilizes a network visualization tool, which systematically discovers a network, producing a sequence of snapshots of the network. We introduce and test our metric on the consecutive snapshots of a network, and against the ground truth. To test the scalability of our metric we use a random matrix theory approach while discovering Erdös-Rényi graphs. This scaling analysis allows us to make predictions about the performance of the discovery process. Springer International Publishing 2018-01-31 2018 /pmc/articles/PMC6214265/ /pubmed/30839726 http://dx.doi.org/10.1007/s41109-017-0042-3 Text en © The Author(s) 2017 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Gera, Ralucca Alonso, L. Crawford, Brian House, Jeffrey Mendez-Bermudez, J. A. Knuth, Thomas Miller, Ryan Identifying network structure similarity using spectral graph theory |
title | Identifying network structure similarity using spectral graph theory |
title_full | Identifying network structure similarity using spectral graph theory |
title_fullStr | Identifying network structure similarity using spectral graph theory |
title_full_unstemmed | Identifying network structure similarity using spectral graph theory |
title_short | Identifying network structure similarity using spectral graph theory |
title_sort | identifying network structure similarity using spectral graph theory |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214265/ https://www.ncbi.nlm.nih.gov/pubmed/30839726 http://dx.doi.org/10.1007/s41109-017-0042-3 |
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