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δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains
In real physical systems the underlying spatial components might not have crisp boundaries and their interactions might not be instantaneous. To this end, we propose δ-MAPS; a method that identifies spatially contiguous and possibly overlapping components referred to as domains, and identifies the l...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214317/ https://www.ncbi.nlm.nih.gov/pubmed/30839838 http://dx.doi.org/10.1007/s41109-018-0078-z |
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author | Fountalis, Ilias Dovrolis, Constantine Bracco, Annalisa Dilkina, Bistra Keilholz, Shella |
author_facet | Fountalis, Ilias Dovrolis, Constantine Bracco, Annalisa Dilkina, Bistra Keilholz, Shella |
author_sort | Fountalis, Ilias |
collection | PubMed |
description | In real physical systems the underlying spatial components might not have crisp boundaries and their interactions might not be instantaneous. To this end, we propose δ-MAPS; a method that identifies spatially contiguous and possibly overlapping components referred to as domains, and identifies the lagged functional relationships between them. Informally, a domain is a spatially contiguous region that somehow participates in the same dynamic effect or function. The latter will result in highly correlated temporal activity between grid cells of the same domain. δ-MAPS first identifies the epicenters of activity of a domain. Next, it identifies a domain as the maximum possible set of spatially contiguous grid cells that include the detected epicenters and satisfy a homogeneity constraint. After identifying the domains, δ-MAPS infers a functional network between them. The proposed network inference method examines the statistical significance of each lagged correlation between two domains, applies a multiple-testing process to control the rate of false positives, infers a range of potential lag values for each edge, and assigns a weight to each edge reflecting the magnitude of interaction between two domains. δ-MAPS is related to clustering, multivariate statistical techniques and network community detection. However, as we discuss and also show with synthetic data, it is also significantly different, avoiding many of the known limitations of these methods. We illustrate the application of δ-MAPS on data from two domains: climate science and neuroscience. First, the sea-surface temperature climate network identifies some well-known teleconnections (such as the lagged connection between the El Nin[Formula: see text] Southern Oscillation and the Indian Ocean). Second, the analysis of resting state fMRI cortical data confirms the presence of known functional resting state networks (default mode, occipital, motor/somatosensory and auditory), and shows that the cortical network includes a backbone of relatively few regions that are densely interconnected. |
format | Online Article Text |
id | pubmed-6214317 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-62143172018-11-13 δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains Fountalis, Ilias Dovrolis, Constantine Bracco, Annalisa Dilkina, Bistra Keilholz, Shella Appl Netw Sci Research In real physical systems the underlying spatial components might not have crisp boundaries and their interactions might not be instantaneous. To this end, we propose δ-MAPS; a method that identifies spatially contiguous and possibly overlapping components referred to as domains, and identifies the lagged functional relationships between them. Informally, a domain is a spatially contiguous region that somehow participates in the same dynamic effect or function. The latter will result in highly correlated temporal activity between grid cells of the same domain. δ-MAPS first identifies the epicenters of activity of a domain. Next, it identifies a domain as the maximum possible set of spatially contiguous grid cells that include the detected epicenters and satisfy a homogeneity constraint. After identifying the domains, δ-MAPS infers a functional network between them. The proposed network inference method examines the statistical significance of each lagged correlation between two domains, applies a multiple-testing process to control the rate of false positives, infers a range of potential lag values for each edge, and assigns a weight to each edge reflecting the magnitude of interaction between two domains. δ-MAPS is related to clustering, multivariate statistical techniques and network community detection. However, as we discuss and also show with synthetic data, it is also significantly different, avoiding many of the known limitations of these methods. We illustrate the application of δ-MAPS on data from two domains: climate science and neuroscience. First, the sea-surface temperature climate network identifies some well-known teleconnections (such as the lagged connection between the El Nin[Formula: see text] Southern Oscillation and the Indian Ocean). Second, the analysis of resting state fMRI cortical data confirms the presence of known functional resting state networks (default mode, occipital, motor/somatosensory and auditory), and shows that the cortical network includes a backbone of relatively few regions that are densely interconnected. Springer International Publishing 2018-07-31 2018 /pmc/articles/PMC6214317/ /pubmed/30839838 http://dx.doi.org/10.1007/s41109-018-0078-z Text en © The Author(s) 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Fountalis, Ilias Dovrolis, Constantine Bracco, Annalisa Dilkina, Bistra Keilholz, Shella δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title | δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title_full | δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title_fullStr | δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title_full_unstemmed | δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title_short | δ-MAPS: from spatio-temporal data to a weighted and lagged network between functional domains |
title_sort | δ-maps: from spatio-temporal data to a weighted and lagged network between functional domains |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6214317/ https://www.ncbi.nlm.nih.gov/pubmed/30839838 http://dx.doi.org/10.1007/s41109-018-0078-z |
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