Cargando…
Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus
We sequenced and analyzed the complete chloroplast genome of Aster tataricus (family Asteraceae), a Chinese herb used medicinally to relieve coughs and reduce sputum. The A. tataricus chloroplast genome was 152,992 bp in size, and harbored a pair of inverted repeat regions (IRa and IRb, each 24,850...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222381/ https://www.ncbi.nlm.nih.gov/pubmed/30248930 http://dx.doi.org/10.3390/molecules23102426 |
_version_ | 1783369193918300160 |
---|---|
author | Shen, Xiaofeng Guo, Shuai Yin, Yu Zhang, Jingjing Yin, Xianmei Liang, Conglian Wang, Zhangwei Huang, Bingfeng Liu, Yanhong Xiao, Shuiming Zhu, Guangwei |
author_facet | Shen, Xiaofeng Guo, Shuai Yin, Yu Zhang, Jingjing Yin, Xianmei Liang, Conglian Wang, Zhangwei Huang, Bingfeng Liu, Yanhong Xiao, Shuiming Zhu, Guangwei |
author_sort | Shen, Xiaofeng |
collection | PubMed |
description | We sequenced and analyzed the complete chloroplast genome of Aster tataricus (family Asteraceae), a Chinese herb used medicinally to relieve coughs and reduce sputum. The A. tataricus chloroplast genome was 152,992 bp in size, and harbored a pair of inverted repeat regions (IRa and IRb, each 24,850 bp) divided into a large single-copy (LSC, 84,698 bp) and a small single-copy (SSC, 18,250 bp) region. Our annotation revealed that the A. tataricus chloroplast genome contained 115 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. In addition, 70 simple sequence repeats (SSRs) were detected in the A. tataricus chloroplast genome, including mononucleotides (36), dinucleotides (1), trinucleotides (23), tetranucleotides (1), pentanucleotides (8), and hexanucleotides (1). Comparative chloroplast genome analysis of three Aster species indicated that a higher similarity was preserved in the IR regions than in the LSC and SSC regions, and that the differences in the degree of preservation were slighter between A. tataricus and A. altaicus than between A. tataricus and A. spathulifolius. Phylogenetic analysis revealed that A. tataricus was more closely related to A. altaicus than to A. spathulifolius. Our findings offer valuable information for future research on Aster species identification and selective breeding. |
format | Online Article Text |
id | pubmed-6222381 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62223812018-11-13 Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus Shen, Xiaofeng Guo, Shuai Yin, Yu Zhang, Jingjing Yin, Xianmei Liang, Conglian Wang, Zhangwei Huang, Bingfeng Liu, Yanhong Xiao, Shuiming Zhu, Guangwei Molecules Article We sequenced and analyzed the complete chloroplast genome of Aster tataricus (family Asteraceae), a Chinese herb used medicinally to relieve coughs and reduce sputum. The A. tataricus chloroplast genome was 152,992 bp in size, and harbored a pair of inverted repeat regions (IRa and IRb, each 24,850 bp) divided into a large single-copy (LSC, 84,698 bp) and a small single-copy (SSC, 18,250 bp) region. Our annotation revealed that the A. tataricus chloroplast genome contained 115 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. In addition, 70 simple sequence repeats (SSRs) were detected in the A. tataricus chloroplast genome, including mononucleotides (36), dinucleotides (1), trinucleotides (23), tetranucleotides (1), pentanucleotides (8), and hexanucleotides (1). Comparative chloroplast genome analysis of three Aster species indicated that a higher similarity was preserved in the IR regions than in the LSC and SSC regions, and that the differences in the degree of preservation were slighter between A. tataricus and A. altaicus than between A. tataricus and A. spathulifolius. Phylogenetic analysis revealed that A. tataricus was more closely related to A. altaicus than to A. spathulifolius. Our findings offer valuable information for future research on Aster species identification and selective breeding. MDPI 2018-09-21 /pmc/articles/PMC6222381/ /pubmed/30248930 http://dx.doi.org/10.3390/molecules23102426 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Shen, Xiaofeng Guo, Shuai Yin, Yu Zhang, Jingjing Yin, Xianmei Liang, Conglian Wang, Zhangwei Huang, Bingfeng Liu, Yanhong Xiao, Shuiming Zhu, Guangwei Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title_full | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title_fullStr | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title_full_unstemmed | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title_short | Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus |
title_sort | complete chloroplast genome sequence and phylogenetic analysis of aster tataricus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222381/ https://www.ncbi.nlm.nih.gov/pubmed/30248930 http://dx.doi.org/10.3390/molecules23102426 |
work_keys_str_mv | AT shenxiaofeng completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT guoshuai completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT yinyu completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT zhangjingjing completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT yinxianmei completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT liangconglian completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT wangzhangwei completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT huangbingfeng completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT liuyanhong completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT xiaoshuiming completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus AT zhuguangwei completechloroplastgenomesequenceandphylogeneticanalysisofastertataricus |