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Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images

PURPOSE: The nonalcoholic fatty liver disease is the most common liver abnormality. Up to date, liver biopsy is the reference standard for direct liver steatosis quantification in hepatic tissue samples. In this paper we propose a neural network-based approach for nonalcoholic fatty liver disease as...

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Autores principales: Byra, Michał, Styczynski, Grzegorz, Szmigielski, Cezary, Kalinowski, Piotr, Michałowski, Łukasz, Paluszkiewicz, Rafał, Ziarkiewicz-Wróblewska, Bogna, Zieniewicz, Krzysztof, Sobieraj, Piotr, Nowicki, Andrzej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6223753/
https://www.ncbi.nlm.nih.gov/pubmed/30094778
http://dx.doi.org/10.1007/s11548-018-1843-2
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author Byra, Michał
Styczynski, Grzegorz
Szmigielski, Cezary
Kalinowski, Piotr
Michałowski, Łukasz
Paluszkiewicz, Rafał
Ziarkiewicz-Wróblewska, Bogna
Zieniewicz, Krzysztof
Sobieraj, Piotr
Nowicki, Andrzej
author_facet Byra, Michał
Styczynski, Grzegorz
Szmigielski, Cezary
Kalinowski, Piotr
Michałowski, Łukasz
Paluszkiewicz, Rafał
Ziarkiewicz-Wróblewska, Bogna
Zieniewicz, Krzysztof
Sobieraj, Piotr
Nowicki, Andrzej
author_sort Byra, Michał
collection PubMed
description PURPOSE: The nonalcoholic fatty liver disease is the most common liver abnormality. Up to date, liver biopsy is the reference standard for direct liver steatosis quantification in hepatic tissue samples. In this paper we propose a neural network-based approach for nonalcoholic fatty liver disease assessment in ultrasound. METHODS: We used the Inception-ResNet-v2 deep convolutional neural network pre-trained on the ImageNet dataset to extract high-level features in liver B-mode ultrasound image sequences. The steatosis level of each liver was graded by wedge biopsy. The proposed approach was compared with the hepatorenal index technique and the gray-level co-occurrence matrix algorithm. After the feature extraction, we applied the support vector machine algorithm to classify images containing fatty liver. Based on liver biopsy, the fatty liver was defined to have more than 5% of hepatocytes with steatosis. Next, we used the features and the Lasso regression method to assess the steatosis level. RESULTS: The area under the receiver operating characteristics curve obtained using the proposed approach was equal to 0.977, being higher than the one obtained with the hepatorenal index method, 0.959, and much higher than in the case of the gray-level co-occurrence matrix algorithm, 0.893. For regression the Spearman correlation coefficients between the steatosis level and the proposed approach, the hepatorenal index and the gray-level co-occurrence matrix algorithm were equal to 0.78, 0.80 and 0.39, respectively. CONCLUSIONS: The proposed approach may help the sonographers automatically diagnose the amount of fat in the liver. The presented approach is efficient and in comparison with other methods does not require the sonographers to select the region of interest.
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spelling pubmed-62237532018-11-18 Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images Byra, Michał Styczynski, Grzegorz Szmigielski, Cezary Kalinowski, Piotr Michałowski, Łukasz Paluszkiewicz, Rafał Ziarkiewicz-Wróblewska, Bogna Zieniewicz, Krzysztof Sobieraj, Piotr Nowicki, Andrzej Int J Comput Assist Radiol Surg Original Article PURPOSE: The nonalcoholic fatty liver disease is the most common liver abnormality. Up to date, liver biopsy is the reference standard for direct liver steatosis quantification in hepatic tissue samples. In this paper we propose a neural network-based approach for nonalcoholic fatty liver disease assessment in ultrasound. METHODS: We used the Inception-ResNet-v2 deep convolutional neural network pre-trained on the ImageNet dataset to extract high-level features in liver B-mode ultrasound image sequences. The steatosis level of each liver was graded by wedge biopsy. The proposed approach was compared with the hepatorenal index technique and the gray-level co-occurrence matrix algorithm. After the feature extraction, we applied the support vector machine algorithm to classify images containing fatty liver. Based on liver biopsy, the fatty liver was defined to have more than 5% of hepatocytes with steatosis. Next, we used the features and the Lasso regression method to assess the steatosis level. RESULTS: The area under the receiver operating characteristics curve obtained using the proposed approach was equal to 0.977, being higher than the one obtained with the hepatorenal index method, 0.959, and much higher than in the case of the gray-level co-occurrence matrix algorithm, 0.893. For regression the Spearman correlation coefficients between the steatosis level and the proposed approach, the hepatorenal index and the gray-level co-occurrence matrix algorithm were equal to 0.78, 0.80 and 0.39, respectively. CONCLUSIONS: The proposed approach may help the sonographers automatically diagnose the amount of fat in the liver. The presented approach is efficient and in comparison with other methods does not require the sonographers to select the region of interest. Springer International Publishing 2018-08-09 2018 /pmc/articles/PMC6223753/ /pubmed/30094778 http://dx.doi.org/10.1007/s11548-018-1843-2 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Byra, Michał
Styczynski, Grzegorz
Szmigielski, Cezary
Kalinowski, Piotr
Michałowski, Łukasz
Paluszkiewicz, Rafał
Ziarkiewicz-Wróblewska, Bogna
Zieniewicz, Krzysztof
Sobieraj, Piotr
Nowicki, Andrzej
Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title_full Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title_fullStr Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title_full_unstemmed Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title_short Transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
title_sort transfer learning with deep convolutional neural network for liver steatosis assessment in ultrasound images
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6223753/
https://www.ncbi.nlm.nih.gov/pubmed/30094778
http://dx.doi.org/10.1007/s11548-018-1843-2
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