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The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genom...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Kunming Institute of Botany, Chinese Academy of Sciences
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224668/ https://www.ncbi.nlm.nih.gov/pubmed/30740569 http://dx.doi.org/10.1016/j.pld.2018.07.004 |
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author | Ma, Liuqing Ma, Pengfei Li, Dezhu |
author_facet | Ma, Liuqing Ma, Pengfei Li, Dezhu |
author_sort | Ma, Liuqing |
collection | PubMed |
description | Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genome from Burmannia disticha L.. This plastome is 157,480 bp and was assembled as a circular sequence with the typical quadripartite structure of plant plastid genomes. This plastome has a regular number of potentially functional genes with a total of 111, including 78 protein coding genes, 4 ribosomal RNA (rRNA) genes, and 29 tRNA genes. The ratio of the total length of genic:intergenic DNA is 1.58:1, and the mean length of intergenic regions is 398 bp, the longest being 1918 bp. The overall GC content of the B. disticha plastome is 34.90%, and the IR regions in B. disticha are more GC rich (39.50%) than the LSC (32.30%) and SSC (28.80%) regions. Phylogenetic analysis of protein-coding sequences from plastomes of related species in the order Dioscoreales support a clade comprising Burmanniaceae and Dioscoreaceae. This phylogenetic placement is congruent with previous findings based on nuclear and mitochondrial evidence. |
format | Online Article Text |
id | pubmed-6224668 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Kunming Institute of Botany, Chinese Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-62246682019-02-08 The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae Ma, Liuqing Ma, Pengfei Li, Dezhu Plant Divers Article Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genome from Burmannia disticha L.. This plastome is 157,480 bp and was assembled as a circular sequence with the typical quadripartite structure of plant plastid genomes. This plastome has a regular number of potentially functional genes with a total of 111, including 78 protein coding genes, 4 ribosomal RNA (rRNA) genes, and 29 tRNA genes. The ratio of the total length of genic:intergenic DNA is 1.58:1, and the mean length of intergenic regions is 398 bp, the longest being 1918 bp. The overall GC content of the B. disticha plastome is 34.90%, and the IR regions in B. disticha are more GC rich (39.50%) than the LSC (32.30%) and SSC (28.80%) regions. Phylogenetic analysis of protein-coding sequences from plastomes of related species in the order Dioscoreales support a clade comprising Burmanniaceae and Dioscoreaceae. This phylogenetic placement is congruent with previous findings based on nuclear and mitochondrial evidence. Kunming Institute of Botany, Chinese Academy of Sciences 2018-07-18 /pmc/articles/PMC6224668/ /pubmed/30740569 http://dx.doi.org/10.1016/j.pld.2018.07.004 Text en © 2018 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Ma, Liuqing Ma, Pengfei Li, Dezhu The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title | The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title_full | The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title_fullStr | The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title_full_unstemmed | The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title_short | The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae |
title_sort | first complete plastid genome of burmannia disticha l. from the mycoheterotrophic monocot family burmanniaceae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224668/ https://www.ncbi.nlm.nih.gov/pubmed/30740569 http://dx.doi.org/10.1016/j.pld.2018.07.004 |
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