Cargando…

The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae

Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genom...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Liuqing, Ma, Pengfei, Li, Dezhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Kunming Institute of Botany, Chinese Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224668/
https://www.ncbi.nlm.nih.gov/pubmed/30740569
http://dx.doi.org/10.1016/j.pld.2018.07.004
_version_ 1783369641526034432
author Ma, Liuqing
Ma, Pengfei
Li, Dezhu
author_facet Ma, Liuqing
Ma, Pengfei
Li, Dezhu
author_sort Ma, Liuqing
collection PubMed
description Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genome from Burmannia disticha L.. This plastome is 157,480 bp and was assembled as a circular sequence with the typical quadripartite structure of plant plastid genomes. This plastome has a regular number of potentially functional genes with a total of 111, including 78 protein coding genes, 4 ribosomal RNA (rRNA) genes, and 29 tRNA genes. The ratio of the total length of genic:intergenic DNA is 1.58:1, and the mean length of intergenic regions is 398 bp, the longest being 1918 bp. The overall GC content of the B. disticha plastome is 34.90%, and the IR regions in B. disticha are more GC rich (39.50%) than the LSC (32.30%) and SSC (28.80%) regions. Phylogenetic analysis of protein-coding sequences from plastomes of related species in the order Dioscoreales support a clade comprising Burmanniaceae and Dioscoreaceae. This phylogenetic placement is congruent with previous findings based on nuclear and mitochondrial evidence.
format Online
Article
Text
id pubmed-6224668
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Kunming Institute of Botany, Chinese Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-62246682019-02-08 The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae Ma, Liuqing Ma, Pengfei Li, Dezhu Plant Divers Article Burmanniaceae is one major group within the monocot order Dioscoreales that has not had its plastome sequenced. Members of Burmanniaceae are mostly achlorophyllous, although the genus Burmannia also includes autotrophs. Here, we report sequencing and analysis of the first Burmanniaceae plastid genome from Burmannia disticha L.. This plastome is 157,480 bp and was assembled as a circular sequence with the typical quadripartite structure of plant plastid genomes. This plastome has a regular number of potentially functional genes with a total of 111, including 78 protein coding genes, 4 ribosomal RNA (rRNA) genes, and 29 tRNA genes. The ratio of the total length of genic:intergenic DNA is 1.58:1, and the mean length of intergenic regions is 398 bp, the longest being 1918 bp. The overall GC content of the B. disticha plastome is 34.90%, and the IR regions in B. disticha are more GC rich (39.50%) than the LSC (32.30%) and SSC (28.80%) regions. Phylogenetic analysis of protein-coding sequences from plastomes of related species in the order Dioscoreales support a clade comprising Burmanniaceae and Dioscoreaceae. This phylogenetic placement is congruent with previous findings based on nuclear and mitochondrial evidence. Kunming Institute of Botany, Chinese Academy of Sciences 2018-07-18 /pmc/articles/PMC6224668/ /pubmed/30740569 http://dx.doi.org/10.1016/j.pld.2018.07.004 Text en © 2018 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Ma, Liuqing
Ma, Pengfei
Li, Dezhu
The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title_full The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title_fullStr The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title_full_unstemmed The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title_short The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae
title_sort first complete plastid genome of burmannia disticha l. from the mycoheterotrophic monocot family burmanniaceae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6224668/
https://www.ncbi.nlm.nih.gov/pubmed/30740569
http://dx.doi.org/10.1016/j.pld.2018.07.004
work_keys_str_mv AT maliuqing thefirstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae
AT mapengfei thefirstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae
AT lidezhu thefirstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae
AT maliuqing firstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae
AT mapengfei firstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae
AT lidezhu firstcompleteplastidgenomeofburmanniadistichalfromthemycoheterotrophicmonocotfamilyburmanniaceae