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The Influence of Pre-Analytical Factors on the Analysis of Circulating MicroRNA
BACKGROUND: MicroRNAs (miRNA) are expected as useful biomarkers for various diseases. We studied the pre-analytical factors causing variation in the analysis of miRNA. MATERIAL AND METHODS: Blood samples were collected from 25 healthy subjects. Plasma and serum were obtained from the same samples. T...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Bentham Science Publishers
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225341/ https://www.ncbi.nlm.nih.gov/pubmed/29984665 http://dx.doi.org/10.2174/2211536607666180709143335 |
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author | Shiotsu, Hiromichi Okada, Kazuhiro Shibuta, Tatsuki Kobayashi, Yuki Shirahama, Saki Kuroki, Chieri Ueda, Saori Ohkuma, Masanori Ikeda, Katsuyoshi Ando, Yukio Matsui, Hirotaka Kayamori, Yuzo Umemura, Tsukuru |
author_facet | Shiotsu, Hiromichi Okada, Kazuhiro Shibuta, Tatsuki Kobayashi, Yuki Shirahama, Saki Kuroki, Chieri Ueda, Saori Ohkuma, Masanori Ikeda, Katsuyoshi Ando, Yukio Matsui, Hirotaka Kayamori, Yuzo Umemura, Tsukuru |
author_sort | Shiotsu, Hiromichi |
collection | PubMed |
description | BACKGROUND: MicroRNAs (miRNA) are expected as useful biomarkers for various diseases. We studied the pre-analytical factors causing variation in the analysis of miRNA. MATERIAL AND METHODS: Blood samples were collected from 25 healthy subjects. Plasma and serum were obtained from the same samples. The levels of miR-451, -16, -126, and -223 were analyzed using RT-qPCR. Cel-miR-39 was added as a spiked-in control in each sample. RESULTS: With the exception of miR-451, the levels of the miRNAs in plasma were higher than in serum. After high-speed centrifugation, the levels of miRNAs were almost equal between plasma and serum except for miR-451. Membrane filtration with 0.45 µm pore size reduced the levels of plasma miRNAs. The coagulation accelerators for serum processing did not affect the analysis of miRNA. The use of fraction containing particles of > 0.45 µm in size showed the inhibitory effect on the analysis of plasma miR-451. The RNase inhibitor was effective for protecting against the degradation of miRNAs. CONCLUSION: Plasma contains factors modifying miRNA profiles. The immediate processing of plasma with membrane filtration and RNase inhibitor may be a relevant method for achieving the stable analysis of miRNA |
format | Online Article Text |
id | pubmed-6225341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Bentham Science Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-62253412018-12-07 The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA Shiotsu, Hiromichi Okada, Kazuhiro Shibuta, Tatsuki Kobayashi, Yuki Shirahama, Saki Kuroki, Chieri Ueda, Saori Ohkuma, Masanori Ikeda, Katsuyoshi Ando, Yukio Matsui, Hirotaka Kayamori, Yuzo Umemura, Tsukuru Microrna Article BACKGROUND: MicroRNAs (miRNA) are expected as useful biomarkers for various diseases. We studied the pre-analytical factors causing variation in the analysis of miRNA. MATERIAL AND METHODS: Blood samples were collected from 25 healthy subjects. Plasma and serum were obtained from the same samples. The levels of miR-451, -16, -126, and -223 were analyzed using RT-qPCR. Cel-miR-39 was added as a spiked-in control in each sample. RESULTS: With the exception of miR-451, the levels of the miRNAs in plasma were higher than in serum. After high-speed centrifugation, the levels of miRNAs were almost equal between plasma and serum except for miR-451. Membrane filtration with 0.45 µm pore size reduced the levels of plasma miRNAs. The coagulation accelerators for serum processing did not affect the analysis of miRNA. The use of fraction containing particles of > 0.45 µm in size showed the inhibitory effect on the analysis of plasma miR-451. The RNase inhibitor was effective for protecting against the degradation of miRNAs. CONCLUSION: Plasma contains factors modifying miRNA profiles. The immediate processing of plasma with membrane filtration and RNase inhibitor may be a relevant method for achieving the stable analysis of miRNA Bentham Science Publishers 2018-12 2018-12 /pmc/articles/PMC6225341/ /pubmed/29984665 http://dx.doi.org/10.2174/2211536607666180709143335 Text en © 2018 Bentham Science Publishers https://creativecommons.org/licenses/by-nc/4.0/legalcode This is an open access article licensed under the terms of the Creative Commons Attribution-Non-Commercial 4.0 International Public License (CC BY-NC 4.0) (https://creativecommons.org/licenses/by-nc/4.0/legalcode), which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited. |
spellingShingle | Article Shiotsu, Hiromichi Okada, Kazuhiro Shibuta, Tatsuki Kobayashi, Yuki Shirahama, Saki Kuroki, Chieri Ueda, Saori Ohkuma, Masanori Ikeda, Katsuyoshi Ando, Yukio Matsui, Hirotaka Kayamori, Yuzo Umemura, Tsukuru The Influence of Pre-Analytical Factors on the Analysis of Circulating MicroRNA |
title | The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA |
title_full | The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA |
title_fullStr | The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA |
title_full_unstemmed | The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA |
title_short | The Influence of Pre-Analytical Factors on the Analysis of Circulating
MicroRNA |
title_sort | influence of pre-analytical factors on the analysis of circulating
microrna |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6225341/ https://www.ncbi.nlm.nih.gov/pubmed/29984665 http://dx.doi.org/10.2174/2211536607666180709143335 |
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