Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii

This data article describes the bacterial diversity of the deep sea shark, Centroscyllium fabricii. The data was acquired by metabarcoding using 16S rDNA. Centroscyllium fabricii, a deep sea shark found at depths below 275 m was sampled during Sagar Sampada cruise no 305 in the Indian Ocean and meta...

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Detalles Bibliográficos
Autores principales: Johny, Tina Kollannoor, Saidumohamed, Bindiya Ellathuparambil, Sasidharan, Raghul Subin, Bhat, Sarita Ganapathy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Economics, Econometrics and Finance
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6226572/
https://www.ncbi.nlm.nih.gov/pubmed/30450395
http://dx.doi.org/10.1016/j.dib.2018.10.062
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author Johny, Tina Kollannoor
Saidumohamed, Bindiya Ellathuparambil
Sasidharan, Raghul Subin
Bhat, Sarita Ganapathy
author_facet Johny, Tina Kollannoor
Saidumohamed, Bindiya Ellathuparambil
Sasidharan, Raghul Subin
Bhat, Sarita Ganapathy
author_sort Johny, Tina Kollannoor
collection PubMed
description This data article describes the bacterial diversity of the deep sea shark, Centroscyllium fabricii. The data was acquired by metabarcoding using 16S rDNA. Centroscyllium fabricii, a deep sea shark found at depths below 275 m was sampled during Sagar Sampada cruise no 305 in the Indian Ocean and metagenomic DNA was isolated from the gut contents using QIAamp DNA stool minikit. V3 region of 16S rDNA region was amplified and the amplicons were sequenced on Illumina MiSeq system using 151 bp × 2 paired end reads. The data of this metagenome is available in the BioSample Submission Portal as Bio-Project PRJNA431407and Sequence Read Archive (SRA) accession number SRR6507004.
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spelling pubmed-62265722018-11-16 Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii Johny, Tina Kollannoor Saidumohamed, Bindiya Ellathuparambil Sasidharan, Raghul Subin Bhat, Sarita Ganapathy Data Brief Economics, Econometrics and Finance This data article describes the bacterial diversity of the deep sea shark, Centroscyllium fabricii. The data was acquired by metabarcoding using 16S rDNA. Centroscyllium fabricii, a deep sea shark found at depths below 275 m was sampled during Sagar Sampada cruise no 305 in the Indian Ocean and metagenomic DNA was isolated from the gut contents using QIAamp DNA stool minikit. V3 region of 16S rDNA region was amplified and the amplicons were sequenced on Illumina MiSeq system using 151 bp × 2 paired end reads. The data of this metagenome is available in the BioSample Submission Portal as Bio-Project PRJNA431407and Sequence Read Archive (SRA) accession number SRR6507004. Elsevier 2018-10-24 /pmc/articles/PMC6226572/ /pubmed/30450395 http://dx.doi.org/10.1016/j.dib.2018.10.062 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Economics, Econometrics and Finance
Johny, Tina Kollannoor
Saidumohamed, Bindiya Ellathuparambil
Sasidharan, Raghul Subin
Bhat, Sarita Ganapathy
Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title_full Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title_fullStr Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title_full_unstemmed Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title_short Metabarcoding data of bacterial diversity of the deep sea shark, Centroscyllium fabricii
title_sort metabarcoding data of bacterial diversity of the deep sea shark, centroscyllium fabricii
topic Economics, Econometrics and Finance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6226572/
https://www.ncbi.nlm.nih.gov/pubmed/30450395
http://dx.doi.org/10.1016/j.dib.2018.10.062
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AT sasidharanraghulsubin metabarcodingdataofbacterialdiversityofthedeepseasharkcentroscylliumfabricii
AT bhatsaritaganapathy metabarcodingdataofbacterialdiversityofthedeepseasharkcentroscylliumfabricii

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