Cargando…

Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes

Nucleotide skew analysis is a versatile method to study the nucleotide composition of RNA/DNA molecules, in particular to reveal characteristic sequence signatures. For instance, skew analysis of the nucleotide bias of several viral RNA genomes indicated that it is enriched in the unpaired, single-s...

Descripción completa

Detalles Bibliográficos
Autores principales:	van Hemert, Formijn, Jebbink, Maarten, van der Ark, Andries, Scholer, Frits, Berkhout, Ben
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6232797/ https://www.ncbi.nlm.nih.gov/pubmed/30510593 http://dx.doi.org/10.1155/2018/6490647

Ejemplares similares

On the biased nucleotide composition of the human coronavirus RNA genome
por: Berkhout, Ben, et al.
Publicado: (2015)

Nucleotide composition of the Zika virus RNA genome and its codon usage
por: van Hemert, Formijn, et al.
Publicado: (2016)

Host-related nucleotide composition and codon usage as driving forces in the recent evolution of the Astroviridae
por: van Hemert, Formijn J., et al.
Publicado: (2007)

The A-nucleotide preference of HIV-1 in the context of its structured RNA genome
por: van Hemert, Formijn J., et al.
Publicado: (2013)

Silent codon positions in the A-rich HIV RNA genome that do not easily become A: Restrictions imposed by the RNA sequence and structure
por: Berkhout, Ben, et al.
Publicado: (2022)

Dynamic Classifier Selection for Data with Skewed Class Distribution Using Imbalance Ratio and Euclidean Distance
por: Zyblewski, Paweł, et al.
Publicado: (2020)

Different rates of (non-)synonymous mutations in astrovirus genes; correlation with gene function
por: van Hemert, Formijn J, et al.
Publicado: (2007)

Differential Binding of Tenofovir and Adefovir to Reverse Transcriptase of Hepatitis B Virus
por: van Hemert, Formijn J., et al.
Publicado: (2014)

Euclidean distance geometry: an introduction
por: Liberti, Leo, et al.
Publicado: (2017)

Function Analysis of the Euclidean Distance between Probability Distributions
por: Kim, Namyong
Publicado: (2018)

Occult hepatitis B infection: an evolutionary scenario
por: van Hemert, Formijn J, et al.
Publicado: (2008)

HIV-1 tolerates changes in A-count in a small segment of the pol gene
por: Klaver, Bep, et al.
Publicado: (2017)

Euclidean distance matrices and their applications in rigidity theory
por: Alfakih, Abdo Y
Publicado: (2018)

One-Center Location With Block and Euclidean Distance
por: Dearing, P. M., et al.
Publicado: (2006)

Protein X of Hepatitis B Virus: Origin and Structure Similarity with the Central Domain of DNA Glycosylase
por: van Hemert, Formijn J., et al.
Publicado: (2011)

Quantitative analysis of Euclidean distance to complement qualitative analysis of facial expression during deception
por: Mondal, Ananya, et al.
Publicado: (2016)

Euclidean distance-optimized data transformation for cluster analysis in biomedical data (EDOtrans)
por: Ultsch, Alfred, et al.
Publicado: (2022)

Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform
por: Xu, Dong, et al.
Publicado: (2009)

Tumor Spheres Quantification with Smoothed Euclidean Distance Transform
por: Sahin, Ismet, et al.
Publicado: (2018)

Euclidean and non-euclidean geometries : development and history
por: Greenberg, Marvin Jay
Publicado: (1994)

Seminars on Euclidean Harmonic Analysis
por: Benedetto, John
Publicado: (1980)

Calculus and analysis in Euclidean space
por: Shurman, Jerry
Publicado: (2016)

New principle for busbar protection based on the Euclidean distance algorithm
por: Dong, Xingxing, et al.
Publicado: (2019)

Quantifying ideological polarization on a network using generalized Euclidean distance
por: Hohmann, Marilena, et al.
Publicado: (2023)

Analysis of spherical symmetries in Euclidean spaces
por: Müller, Claus
Publicado: (1998)

Genome structure and transcriptional regulation of human coronavirus NL63
por: Pyrc, Krzysztof, et al.
Publicado: (2004)

Detection of New Viruses by VIDISCA: Virus Discovery Based on cDNA-Amplified Fragment Length Polymorphism
por: Pyrc, Krzysztof, et al.
Publicado: (2007)

Is the universe Euclidean?
por: Duncan, M J, et al.
Publicado: (1989)

The Hippocampus and Entorhinal Cortex Encode the Path and Euclidean Distances to Goals during Navigation
por: Howard, Lorelei R., et al.
Publicado: (2014)

Subcellular Euclidean distance measurements with multicolor fluorescence localization imaging in cultured cells
por: Germanova, Tsvetelina E., et al.
Publicado: (2021)

The skewness of the distance-redshift relation in $\Lambda$CDM
por: Schiavone, Tiziano, et al.
Publicado: (2023)

Foundation of Euclidean and non-Euclidean geometries according to F. Klein
por: Redei, L, et al.
Publicado: (1968)

The Hepatitis B Virus X Protein Inhibits Thymine DNA Glycosylase Initiated Base Excision Repair
por: van de Klundert, Maarten A. A., et al.
Publicado: (2012)

Some Similarity Measures of Neutrosophic Sets Based on the Euclidean Distance and Their Application in Medical Diagnosis
por: Liu, Donghai, et al.
Publicado: (2018)

An Indoor Navigation Algorithm Using Multi-Dimensional Euclidean Distance and an Adaptive Particle Filter
por: Hu, Yunbing, et al.
Publicado: (2021)

Identification of a new genotype of Torque Teno Mini virus
por: Jazaeri Farsani, Seyed Mohammad, et al.
Publicado: (2013)

A Novel Astrovirus-Like RNA Virus Detected in Human Stool
por: Oude Munnink, Bas B., et al.
Publicado: (2016)

SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes
por: Lu, Jennifer, et al.
Publicado: (2020)

Analytic Euclidean Bootstrap
por: Mukhametzhanov, Baur, et al.
Publicado: (2018)

Euclidean design theory
por: Sawa, Masanori, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_3rtsgtpd0eda1be8tdq5orckek