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Nonequilibrium associative retrieval of multiple stored self-assembly targets

Many biological systems rely on the ability to self-assemble different target structures using the same set of components. Equilibrium self-assembly suffers from a limited capacity in such cases, due to an increasing number of decoy states that grows rapidly with the number of targets encoded. Moreo...

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Detalles Bibliográficos
Autores principales: Bisker, Gili, England, Jeremy L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6233095/
https://www.ncbi.nlm.nih.gov/pubmed/30348806
http://dx.doi.org/10.1073/pnas.1805769115
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author Bisker, Gili
England, Jeremy L.
author_facet Bisker, Gili
England, Jeremy L.
author_sort Bisker, Gili
collection PubMed
description Many biological systems rely on the ability to self-assemble different target structures using the same set of components. Equilibrium self-assembly suffers from a limited capacity in such cases, due to an increasing number of decoy states that grows rapidly with the number of targets encoded. Moreover, improving the kinetic stability of a target at equilibrium carries the price of introducing kinetic traps, leading to slower assembly. Using a toy physical model of interacting particles, we demonstrate that local driving can improve both the assembly time and kinetic stability of multitarget self-assembly, as well as reduce fluctuations around the target configuration. We further show that the local drive can result in a steady-state probability distribution over target structures that deviates from the Boltzmann distribution in a way that depends on the types of interactions that stabilize the targets. Our results illustrate the role that nonequilibrium driving plays in overcoming tradeoffs that are inherent to equilibrium assemblies.
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spelling pubmed-62330952018-11-14 Nonequilibrium associative retrieval of multiple stored self-assembly targets Bisker, Gili England, Jeremy L. Proc Natl Acad Sci U S A PNAS Plus Many biological systems rely on the ability to self-assemble different target structures using the same set of components. Equilibrium self-assembly suffers from a limited capacity in such cases, due to an increasing number of decoy states that grows rapidly with the number of targets encoded. Moreover, improving the kinetic stability of a target at equilibrium carries the price of introducing kinetic traps, leading to slower assembly. Using a toy physical model of interacting particles, we demonstrate that local driving can improve both the assembly time and kinetic stability of multitarget self-assembly, as well as reduce fluctuations around the target configuration. We further show that the local drive can result in a steady-state probability distribution over target structures that deviates from the Boltzmann distribution in a way that depends on the types of interactions that stabilize the targets. Our results illustrate the role that nonequilibrium driving plays in overcoming tradeoffs that are inherent to equilibrium assemblies. National Academy of Sciences 2018-11-06 2018-10-22 /pmc/articles/PMC6233095/ /pubmed/30348806 http://dx.doi.org/10.1073/pnas.1805769115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle PNAS Plus
Bisker, Gili
England, Jeremy L.
Nonequilibrium associative retrieval of multiple stored self-assembly targets
title Nonequilibrium associative retrieval of multiple stored self-assembly targets
title_full Nonequilibrium associative retrieval of multiple stored self-assembly targets
title_fullStr Nonequilibrium associative retrieval of multiple stored self-assembly targets
title_full_unstemmed Nonequilibrium associative retrieval of multiple stored self-assembly targets
title_short Nonequilibrium associative retrieval of multiple stored self-assembly targets
title_sort nonequilibrium associative retrieval of multiple stored self-assembly targets
topic PNAS Plus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6233095/
https://www.ncbi.nlm.nih.gov/pubmed/30348806
http://dx.doi.org/10.1073/pnas.1805769115
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