Cargando…

Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data

BACKGROUND: This study aimed to introduce recursively imputed survival trees into multistate survival models (MSRIST) to analyze these types of data and to identify the prognostic factors influencing the disease progression in patients with intermediate events. The proposed method is fully nonparame...

Descripción completa

Detalles Bibliográficos
Autores principales: Tapak, Leili, Kosorok, Michael R., Sadeghifar, Majid, Hamidi, Omid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234548/
https://www.ncbi.nlm.nih.gov/pubmed/30424736
http://dx.doi.org/10.1186/s12874-018-0596-5
_version_ 1783370714634518528
author Tapak, Leili
Kosorok, Michael R.
Sadeghifar, Majid
Hamidi, Omid
author_facet Tapak, Leili
Kosorok, Michael R.
Sadeghifar, Majid
Hamidi, Omid
author_sort Tapak, Leili
collection PubMed
description BACKGROUND: This study aimed to introduce recursively imputed survival trees into multistate survival models (MSRIST) to analyze these types of data and to identify the prognostic factors influencing the disease progression in patients with intermediate events. The proposed method is fully nonparametric and can be used for estimating transition probabilities. METHODS: A general algorithm was provided for analyzing multi-state data with a focus on the illness-death and progressive multi-state models. The model considered both beyond Markov and Non-Markov settings. We also proposed a multi-state random survival method (MSRSF) and compared their performance with the classical multi-state Cox model. We applied the proposed method to a dataset related to HIV/AIDS patients based on a retrospective cohort study extracted in Tehran from April 2004 to March 2014 consist of 2473 HIV-infected patients. RESULTS: The results showed that MSRIST outperformed the classical multistate method using Cox Model and MSRSF in terms of integrated Brier score and concordance index over 500 repetitions. We also identified a set of important risk factors as well as their interactions on different states of HIV and AIDS progression. CONCLUSIONS: There are different strategies for modelling the intermediate event. We adapted two newly developed data mining technique (RSF and RIST) for multistate models (MSRSF and MSRIST) to identify important risk factors in different stages of the diseases. The methods can capture any complex relationship between variables and can be used as a useful tool for identifying important risk factors in different states of this disease.
format Online
Article
Text
id pubmed-6234548
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-62345482018-11-23 Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data Tapak, Leili Kosorok, Michael R. Sadeghifar, Majid Hamidi, Omid BMC Med Res Methodol Research Article BACKGROUND: This study aimed to introduce recursively imputed survival trees into multistate survival models (MSRIST) to analyze these types of data and to identify the prognostic factors influencing the disease progression in patients with intermediate events. The proposed method is fully nonparametric and can be used for estimating transition probabilities. METHODS: A general algorithm was provided for analyzing multi-state data with a focus on the illness-death and progressive multi-state models. The model considered both beyond Markov and Non-Markov settings. We also proposed a multi-state random survival method (MSRSF) and compared their performance with the classical multi-state Cox model. We applied the proposed method to a dataset related to HIV/AIDS patients based on a retrospective cohort study extracted in Tehran from April 2004 to March 2014 consist of 2473 HIV-infected patients. RESULTS: The results showed that MSRIST outperformed the classical multistate method using Cox Model and MSRSF in terms of integrated Brier score and concordance index over 500 repetitions. We also identified a set of important risk factors as well as their interactions on different states of HIV and AIDS progression. CONCLUSIONS: There are different strategies for modelling the intermediate event. We adapted two newly developed data mining technique (RSF and RIST) for multistate models (MSRSF and MSRIST) to identify important risk factors in different stages of the diseases. The methods can capture any complex relationship between variables and can be used as a useful tool for identifying important risk factors in different states of this disease. BioMed Central 2018-11-13 /pmc/articles/PMC6234548/ /pubmed/30424736 http://dx.doi.org/10.1186/s12874-018-0596-5 Text en © The Author(s). 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Tapak, Leili
Kosorok, Michael R.
Sadeghifar, Majid
Hamidi, Omid
Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title_full Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title_fullStr Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title_full_unstemmed Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title_short Multistate recursively imputed survival trees for time-to-event data analysis: an application to AIDS and mortality post-HIV infection data
title_sort multistate recursively imputed survival trees for time-to-event data analysis: an application to aids and mortality post-hiv infection data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234548/
https://www.ncbi.nlm.nih.gov/pubmed/30424736
http://dx.doi.org/10.1186/s12874-018-0596-5
work_keys_str_mv AT tapakleili multistaterecursivelyimputedsurvivaltreesfortimetoeventdataanalysisanapplicationtoaidsandmortalityposthivinfectiondata
AT kosorokmichaelr multistaterecursivelyimputedsurvivaltreesfortimetoeventdataanalysisanapplicationtoaidsandmortalityposthivinfectiondata
AT sadeghifarmajid multistaterecursivelyimputedsurvivaltreesfortimetoeventdataanalysisanapplicationtoaidsandmortalityposthivinfectiondata
AT hamidiomid multistaterecursivelyimputedsurvivaltreesfortimetoeventdataanalysisanapplicationtoaidsandmortalityposthivinfectiondata