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A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma

With the development of new advances in hepatocellular carcinoma (HCC) management and noninvasive radiological techniques, high‐risk patient groups such as those with hepatitis virus are closely monitored. HCC is increasingly diagnosed early, and treatment may be successful. In spite of this progres...

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Autores principales: Long, Junyu, Zhang, Lei, Wan, Xueshuai, Lin, Jianzhen, Bai, Yi, Xu, Weiyu, Xiong, Jianping, Zhao, Haitao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237588/
https://www.ncbi.nlm.nih.gov/pubmed/30247807
http://dx.doi.org/10.1111/jcmm.13863
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author Long, Junyu
Zhang, Lei
Wan, Xueshuai
Lin, Jianzhen
Bai, Yi
Xu, Weiyu
Xiong, Jianping
Zhao, Haitao
author_facet Long, Junyu
Zhang, Lei
Wan, Xueshuai
Lin, Jianzhen
Bai, Yi
Xu, Weiyu
Xiong, Jianping
Zhao, Haitao
author_sort Long, Junyu
collection PubMed
description With the development of new advances in hepatocellular carcinoma (HCC) management and noninvasive radiological techniques, high‐risk patient groups such as those with hepatitis virus are closely monitored. HCC is increasingly diagnosed early, and treatment may be successful. In spite of this progress, most patients who undergo a hepatectomy will eventually relapse, and the outcomes of HCC patients remain unsatisfactory. In our study, we aimed to identify potential gene biomarkers based on RNA sequencing data to predict and improve HCC patient survival. The gene expression data and clinical information were acquired from The Cancer Genome Atlas (TCGA) database. A total of 339 differentially expressed genes (DEGs) were obtained between the HCC (n = 374) and normal tissues (n = 50). Four genes (CENPA, SPP1, MAGEB6 and HOXD9) were screened by univariate, Lasso and multivariate Cox regression analyses to develop the prognostic model. Further analysis revealed the independent prognostic capacity of the prognostic model in relation to other clinical characteristics. The receiver operating characteristic (ROC) curve analysis confirmed the good performance of the prognostic model. Then, the prognostic model and the expression levels of the four genes were validated using the Gene Expression Omnibus (GEO) dataset. A nomogram comprising the prognostic model to predict the overall survival was established, and internal validation in the TCGA cohort was performed. The predictive model and the nomogram will enable patients with HCC to be more accurately managed in trials testing new drugs and in clinical practice.
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spelling pubmed-62375882018-12-01 A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma Long, Junyu Zhang, Lei Wan, Xueshuai Lin, Jianzhen Bai, Yi Xu, Weiyu Xiong, Jianping Zhao, Haitao J Cell Mol Med Original Articles With the development of new advances in hepatocellular carcinoma (HCC) management and noninvasive radiological techniques, high‐risk patient groups such as those with hepatitis virus are closely monitored. HCC is increasingly diagnosed early, and treatment may be successful. In spite of this progress, most patients who undergo a hepatectomy will eventually relapse, and the outcomes of HCC patients remain unsatisfactory. In our study, we aimed to identify potential gene biomarkers based on RNA sequencing data to predict and improve HCC patient survival. The gene expression data and clinical information were acquired from The Cancer Genome Atlas (TCGA) database. A total of 339 differentially expressed genes (DEGs) were obtained between the HCC (n = 374) and normal tissues (n = 50). Four genes (CENPA, SPP1, MAGEB6 and HOXD9) were screened by univariate, Lasso and multivariate Cox regression analyses to develop the prognostic model. Further analysis revealed the independent prognostic capacity of the prognostic model in relation to other clinical characteristics. The receiver operating characteristic (ROC) curve analysis confirmed the good performance of the prognostic model. Then, the prognostic model and the expression levels of the four genes were validated using the Gene Expression Omnibus (GEO) dataset. A nomogram comprising the prognostic model to predict the overall survival was established, and internal validation in the TCGA cohort was performed. The predictive model and the nomogram will enable patients with HCC to be more accurately managed in trials testing new drugs and in clinical practice. John Wiley and Sons Inc. 2018-09-24 2018-12 /pmc/articles/PMC6237588/ /pubmed/30247807 http://dx.doi.org/10.1111/jcmm.13863 Text en © 2018 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Long, Junyu
Zhang, Lei
Wan, Xueshuai
Lin, Jianzhen
Bai, Yi
Xu, Weiyu
Xiong, Jianping
Zhao, Haitao
A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title_full A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title_fullStr A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title_full_unstemmed A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title_short A four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
title_sort four‐gene‐based prognostic model predicts overall survival in patients with hepatocellular carcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237588/
https://www.ncbi.nlm.nih.gov/pubmed/30247807
http://dx.doi.org/10.1111/jcmm.13863
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