Cargando…

TranSurVeyor: an improved database-free algorithm for finding non-reference transpositions in high-throughput sequencing data

Transpositions transfer DNA segments between different loci within a genome; in particular, when a transposition is found in a sample but not in a reference genome, it is called a non-reference transposition. They are important structural variations that have clinical impact. Transpositions can be c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Rajaby, Ramesh, Sung, Wing-Kin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237741/ https://www.ncbi.nlm.nih.gov/pubmed/30137425 http://dx.doi.org/10.1093/nar/gky685

Ejemplares similares

SurVirus: a repeat-aware virus integration caller
por: Rajaby, Ramesh, et al.
Publicado: (2021)

INSurVeyor: improving insertion calling from short read sequencing data
por: Rajaby, Ramesh, et al.
Publicado: (2023)

SNP discovery by mismatch-targeting of Mu transposition
por: Orsini, Luisa, et al.
Publicado: (2007)

Extensive libraries of gene truncation variants generated by in vitro transposition
por: Morelli, Aleardo, et al.
Publicado: (2017)

DNA transposition by protein transduction of the piggyBac transposase from lentiviral Gag precursors
por: Cai, Yujia, et al.
Publicado: (2014)

AccuTyping: new algorithms for automated analysis of data from high-throughput genotyping with oligonucleotide microarrays
por: Hu, Guohong, et al.
Publicado: (2006)

Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm
por: Magi, Alberto, et al.
Publicado: (2011)

Efficient transfer of two large secondary metabolite pathway gene clusters into heterologous hosts by transposition
por: Fu, Jun, et al.
Publicado: (2008)

Simple and straightforward construction of a mouse gene targeting vector using in vitro transposition reactions
por: Aoyama, Minako, et al.
Publicado: (2005)

Combination of Sleeping Beauty transposition and chemically induced dimerization selection for robust production of engineered cells
por: Kacherovsky, Nataly, et al.
Publicado: (2012)

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes
por: Ng, Patrick, et al.
Publicado: (2006)

Nanoliter high throughput quantitative PCR
por: Morrison, Tom, et al.
Publicado: (2006)

Analyzing editosome function in high-throughput
por: Del Campo, Cristian, et al.
Publicado: (2020)

Reassembling green fluorescent protein for in vitro evaluation of trans-translation
por: Guyomar, Charlotte, et al.
Publicado: (2020)

High-throughput methods for measuring DNA thermodynamics
por: Bae, Jin H, et al.
Publicado: (2020)

A versatile cis-blocking and trans-activation strategy for ribozyme characterization
por: Kennedy, Andrew B., et al.
Publicado: (2013)

BatAlign: an incremental method for accurate alignment of sequencing reads
por: Lim, Jing-Quan, et al.
Publicado: (2015)

High-throughput assays for DNA gyrase and other topoisomerases
por: Maxwell, Anthony, et al.
Publicado: (2006)

High-throughput detection and multiplex identification of cell contaminations
por: Schmitt, Markus, et al.
Publicado: (2009)

Fluorescence strategies for high-throughput quantification of protein interactions
por: Hieb, Aaron R., et al.
Publicado: (2012)

A high-throughput approach to profile RNA structure
por: Delli Ponti, Riccardo, et al.
Publicado: (2017)

Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
por: Lomsadze, Alexandre, et al.
Publicado: (2014)

Targeted high-throughput sequencing of tagged nucleic acid samples
por: Meyer, Matthias, et al.
Publicado: (2007)

High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling
por: Till, Bradley J., et al.
Publicado: (2006)

Quantifying selection in high-throughput Immunoglobulin sequencing data sets
por: Yaari, Gur, et al.
Publicado: (2012)

Summarizing and correcting the GC content bias in high-throughput sequencing
por: Benjamini, Yuval, et al.
Publicado: (2012)

Detecting Alu insertions from high-throughput sequencing data
por: David, Matei, et al.
Publicado: (2013)

High-throughput, cost-effective verification of structural DNA assembly
por: Dharmadi, Yandi, et al.
Publicado: (2014)

High-throughput assay and engineering of self-cleaving ribozymes by sequencing
por: Kobori, Shungo, et al.
Publicado: (2015)

Determination of tRNA aminoacylation levels by high-throughput sequencing
por: Evans, Molly E., et al.
Publicado: (2017)

Using high-throughput barcode sequencing to efficiently map connectomes
por: Peikon, Ian D., et al.
Publicado: (2017)

Reference-free detection of isolated SNPs
por: Uricaru, Raluca, et al.
Publicado: (2015)

Establishment of an in vitro trans-splicing system in Trypanosoma brucei that requires endogenous spliced leader RNA
por: Shaked, Hadassa, et al.
Publicado: (2010)

Analysis of C. elegans muscle transcriptome using trans-splicing-based RNA tagging (SRT)
por: Ma, Xiaopeng, et al.
Publicado: (2016)

Optimization of experimental design parameters for high-throughput chromatin immunoprecipitation studies
por: Ponzielli, Romina, et al.
Publicado: (2008)

A high throughput method for genome-wide analysis of retroviral integration
por: Mantovani, Julie, et al.
Publicado: (2006)

Systematic bias in high-throughput sequencing data and its correction by BEADS
por: Cheung, Ming-Sin, et al.
Publicado: (2011)

Characterization of L1 retrotransposition with high-throughput dual-luciferase assays
por: Xie, Yi, et al.
Publicado: (2011)

Novel method for high-throughput colony PCR screening in nanoliter-reactors
por: Walser, Marcel, et al.
Publicado: (2009)

A high-throughput DNA methylation analysis of a single cell
por: Kantlehner, Martin, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_sfv9lva439hon6nhk0clfo3193