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Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals

Knowledge of life‐history parameters is frequently lacking in many species and populations, often because they are cryptic or logistically challenging to study, but also because life‐history parameters can be difficult to estimate with adequate precision. We suggest using hierarchical Bayesian analy...

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Autores principales: Trukhanova, Irina S., Conn, Paul B., Boveng, Peter L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6238133/
https://www.ncbi.nlm.nih.gov/pubmed/30464825
http://dx.doi.org/10.1002/ece3.4522
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author Trukhanova, Irina S.
Conn, Paul B.
Boveng, Peter L.
author_facet Trukhanova, Irina S.
Conn, Paul B.
Boveng, Peter L.
author_sort Trukhanova, Irina S.
collection PubMed
description Knowledge of life‐history parameters is frequently lacking in many species and populations, often because they are cryptic or logistically challenging to study, but also because life‐history parameters can be difficult to estimate with adequate precision. We suggest using hierarchical Bayesian analysis (HBA) to analyze variation in life‐history parameters among related species, with prior variance components representing shared taxonomy, phenotypic plasticity, and observation error. We develop such a framework to analyze U‐shaped natural mortality patterns typical of mammalian life history from a variety of sparse datasets. Using 39 datasets from seals in the family Phocidae, we analyzed 16 models with different formulations for natural morality, specifically the amount of taxonomic and data‐level variance components (subfamily, species, study, and dataset levels) included in mortality hazard parameters. The highest‐ranked model according to DIC included subfamily‐, species‐, and dataset‐level parameter variance components and resulted in typical U‐shaped hazard functions for the 11 seal species in the study. Species with little data had survival schedules shrunken to the mean. We suggest that evolutionary and population ecologists consider employing HBA to quantify variation in life‐history parameters. This approach can be useful for increasing the precision of estimates resulting from a collection of (often sparse) datasets, and for producing prior distributions for populations missing life‐history data.
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spelling pubmed-62381332018-11-21 Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals Trukhanova, Irina S. Conn, Paul B. Boveng, Peter L. Ecol Evol Original Research Knowledge of life‐history parameters is frequently lacking in many species and populations, often because they are cryptic or logistically challenging to study, but also because life‐history parameters can be difficult to estimate with adequate precision. We suggest using hierarchical Bayesian analysis (HBA) to analyze variation in life‐history parameters among related species, with prior variance components representing shared taxonomy, phenotypic plasticity, and observation error. We develop such a framework to analyze U‐shaped natural mortality patterns typical of mammalian life history from a variety of sparse datasets. Using 39 datasets from seals in the family Phocidae, we analyzed 16 models with different formulations for natural morality, specifically the amount of taxonomic and data‐level variance components (subfamily, species, study, and dataset levels) included in mortality hazard parameters. The highest‐ranked model according to DIC included subfamily‐, species‐, and dataset‐level parameter variance components and resulted in typical U‐shaped hazard functions for the 11 seal species in the study. Species with little data had survival schedules shrunken to the mean. We suggest that evolutionary and population ecologists consider employing HBA to quantify variation in life‐history parameters. This approach can be useful for increasing the precision of estimates resulting from a collection of (often sparse) datasets, and for producing prior distributions for populations missing life‐history data. John Wiley and Sons Inc. 2018-10-16 /pmc/articles/PMC6238133/ /pubmed/30464825 http://dx.doi.org/10.1002/ece3.4522 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Trukhanova, Irina S.
Conn, Paul B.
Boveng, Peter L.
Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title_full Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title_fullStr Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title_full_unstemmed Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title_short Taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
title_sort taxonomy‐based hierarchical analysis of natural mortality: polar and subpolar phocid seals
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6238133/
https://www.ncbi.nlm.nih.gov/pubmed/30464825
http://dx.doi.org/10.1002/ece3.4522
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