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Ossification area localization in pediatric hand radiographs using deep neural networks for object detection

BACKGROUND: Detection of ossification areas of hand bones in X-ray images is an important task, e.g. as a preprocessing step in automated bone age estimation. Deep neural networks have emerged recently as de facto standard detection methods, but their drawback is the need of large annotated datasets...

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Autores principales: Koitka, Sven, Demircioglu, Aydin, Kim, Moon S., Friedrich, Christoph M., Nensa, Felix
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239319/
https://www.ncbi.nlm.nih.gov/pubmed/30444906
http://dx.doi.org/10.1371/journal.pone.0207496
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author Koitka, Sven
Demircioglu, Aydin
Kim, Moon S.
Friedrich, Christoph M.
Nensa, Felix
author_facet Koitka, Sven
Demircioglu, Aydin
Kim, Moon S.
Friedrich, Christoph M.
Nensa, Felix
author_sort Koitka, Sven
collection PubMed
description BACKGROUND: Detection of ossification areas of hand bones in X-ray images is an important task, e.g. as a preprocessing step in automated bone age estimation. Deep neural networks have emerged recently as de facto standard detection methods, but their drawback is the need of large annotated datasets. Finetuning pre-trained networks is a viable alternative, but it is not clear a priori if training with small annotated datasets will be successful, as it depends on the problem at hand. In this paper, we show that pre-trained networks can be utilized to produce an effective detector of ossification areas in pediatric X-ray images of hands. METHODS AND FINDINGS: A publicly available Faster R-CNN network, pre-trained on the COCO dataset, was utilized and finetuned with 240 manually annotated radiographs from the RSNA Pediatric Bone Age Challenge, which comprises over 14.000 pediatric radiographs. The validation is done on another 89 radiographs from the dataset and the performance is measured by Intersection-over-Union (IoU). To understand the effect of the data size on the pre-trained network, subsampling was applied to the training data and the training was repeated. Additionally, the network was trained from scratch without any pre-trained weights. Finally, to understand whether the trained model could be useful, we compared the inference of the network to an annotation of an expert radiologist. The finetuned network was able to achieve an average precision (mAP@0.5IoU) of 92.92 ± 1.93. Apart from the wrist region, all ossification areas were able to benefit from more data. In contrast, the network trained from scratch was not able to produce any correct results. When compared to the annotations of the expert radiologist, the network was able to localize the regions quite well, as the F1-Score was on average 91.85 ± 1.06. CONCLUSIONS: By finetuning a pre-trained deep neural network, with 240 annotated radiographs, we were able to successfully detect ossification areas in prediatric hand radiographs.
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spelling pubmed-62393192018-12-01 Ossification area localization in pediatric hand radiographs using deep neural networks for object detection Koitka, Sven Demircioglu, Aydin Kim, Moon S. Friedrich, Christoph M. Nensa, Felix PLoS One Research Article BACKGROUND: Detection of ossification areas of hand bones in X-ray images is an important task, e.g. as a preprocessing step in automated bone age estimation. Deep neural networks have emerged recently as de facto standard detection methods, but their drawback is the need of large annotated datasets. Finetuning pre-trained networks is a viable alternative, but it is not clear a priori if training with small annotated datasets will be successful, as it depends on the problem at hand. In this paper, we show that pre-trained networks can be utilized to produce an effective detector of ossification areas in pediatric X-ray images of hands. METHODS AND FINDINGS: A publicly available Faster R-CNN network, pre-trained on the COCO dataset, was utilized and finetuned with 240 manually annotated radiographs from the RSNA Pediatric Bone Age Challenge, which comprises over 14.000 pediatric radiographs. The validation is done on another 89 radiographs from the dataset and the performance is measured by Intersection-over-Union (IoU). To understand the effect of the data size on the pre-trained network, subsampling was applied to the training data and the training was repeated. Additionally, the network was trained from scratch without any pre-trained weights. Finally, to understand whether the trained model could be useful, we compared the inference of the network to an annotation of an expert radiologist. The finetuned network was able to achieve an average precision (mAP@0.5IoU) of 92.92 ± 1.93. Apart from the wrist region, all ossification areas were able to benefit from more data. In contrast, the network trained from scratch was not able to produce any correct results. When compared to the annotations of the expert radiologist, the network was able to localize the regions quite well, as the F1-Score was on average 91.85 ± 1.06. CONCLUSIONS: By finetuning a pre-trained deep neural network, with 240 annotated radiographs, we were able to successfully detect ossification areas in prediatric hand radiographs. Public Library of Science 2018-11-16 /pmc/articles/PMC6239319/ /pubmed/30444906 http://dx.doi.org/10.1371/journal.pone.0207496 Text en © 2018 Koitka et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Koitka, Sven
Demircioglu, Aydin
Kim, Moon S.
Friedrich, Christoph M.
Nensa, Felix
Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title_full Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title_fullStr Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title_full_unstemmed Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title_short Ossification area localization in pediatric hand radiographs using deep neural networks for object detection
title_sort ossification area localization in pediatric hand radiographs using deep neural networks for object detection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239319/
https://www.ncbi.nlm.nih.gov/pubmed/30444906
http://dx.doi.org/10.1371/journal.pone.0207496
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