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Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation a...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239329/ https://www.ncbi.nlm.nih.gov/pubmed/30444907 http://dx.doi.org/10.1371/journal.pone.0207661 |
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author | Kawagishi, Masami Kubo, Takeshi Sakamoto, Ryo Yakami, Masahiro Fujimoto, Koji Aoyama, Gakuto Emoto, Yutaka Sekiguchi, Hiroyuki Sakai, Koji Iizuka, Yoshio Nishio, Mizuho Yamamoto, Hiroyuki Togashi, Kaori |
author_facet | Kawagishi, Masami Kubo, Takeshi Sakamoto, Ryo Yakami, Masahiro Fujimoto, Koji Aoyama, Gakuto Emoto, Yutaka Sekiguchi, Hiroyuki Sakai, Koji Iizuka, Yoshio Nishio, Mizuho Yamamoto, Hiroyuki Togashi, Kaori |
author_sort | Kawagishi, Masami |
collection | PubMed |
description | We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation adequacy and inference accuracy. In addition, we evaluated the usefulness of prior experts’ (radiologists’) knowledge while constructing the models. In total, 179 patients with lung nodules were included and divided into 79 and 100 cases for training and test data, respectively. F-measure and accuracy were used to assess explanation adequacy and inference accuracy, respectively. For F-measure, reasons were defined as proper subsets of Evidence that had a strong influence on the inference result. The inference models were automatically constructed using the Bayesian network and Markov chain Monte Carlo methods, selecting only those models that met the predefined criteria. During model constructions, we examined the effect of including radiologist’s knowledge in the initial Bayesian network models. Performance of the best models in terms of F-measure, accuracy, and evaluation metric were as follows: 0.411, 72.0%, and 0.566, respectively, with prior knowledge, and 0.274, 65.0%, and 0.462, respectively, without prior knowledge. The best models with prior knowledge were then subjectively and independently evaluated by two radiologists using a 5-point scale, with 5, 3, and 1 representing beneficial, appropriate, and detrimental, respectively. The average scores by the two radiologists were 3.97 and 3.76 for the test data, indicating that the proposed computer-aided diagnosis system was acceptable to them. In conclusion, the proposed method incorporating radiologists’ knowledge could help in eliminating radiologists’ distrust of computer-aided diagnosis and improving its performance. |
format | Online Article Text |
id | pubmed-6239329 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-62393292018-12-01 Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge Kawagishi, Masami Kubo, Takeshi Sakamoto, Ryo Yakami, Masahiro Fujimoto, Koji Aoyama, Gakuto Emoto, Yutaka Sekiguchi, Hiroyuki Sakai, Koji Iizuka, Yoshio Nishio, Mizuho Yamamoto, Hiroyuki Togashi, Kaori PLoS One Research Article We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation adequacy and inference accuracy. In addition, we evaluated the usefulness of prior experts’ (radiologists’) knowledge while constructing the models. In total, 179 patients with lung nodules were included and divided into 79 and 100 cases for training and test data, respectively. F-measure and accuracy were used to assess explanation adequacy and inference accuracy, respectively. For F-measure, reasons were defined as proper subsets of Evidence that had a strong influence on the inference result. The inference models were automatically constructed using the Bayesian network and Markov chain Monte Carlo methods, selecting only those models that met the predefined criteria. During model constructions, we examined the effect of including radiologist’s knowledge in the initial Bayesian network models. Performance of the best models in terms of F-measure, accuracy, and evaluation metric were as follows: 0.411, 72.0%, and 0.566, respectively, with prior knowledge, and 0.274, 65.0%, and 0.462, respectively, without prior knowledge. The best models with prior knowledge were then subjectively and independently evaluated by two radiologists using a 5-point scale, with 5, 3, and 1 representing beneficial, appropriate, and detrimental, respectively. The average scores by the two radiologists were 3.97 and 3.76 for the test data, indicating that the proposed computer-aided diagnosis system was acceptable to them. In conclusion, the proposed method incorporating radiologists’ knowledge could help in eliminating radiologists’ distrust of computer-aided diagnosis and improving its performance. Public Library of Science 2018-11-16 /pmc/articles/PMC6239329/ /pubmed/30444907 http://dx.doi.org/10.1371/journal.pone.0207661 Text en © 2018 Kawagishi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Kawagishi, Masami Kubo, Takeshi Sakamoto, Ryo Yakami, Masahiro Fujimoto, Koji Aoyama, Gakuto Emoto, Yutaka Sekiguchi, Hiroyuki Sakai, Koji Iizuka, Yoshio Nishio, Mizuho Yamamoto, Hiroyuki Togashi, Kaori Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title | Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title_full | Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title_fullStr | Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title_full_unstemmed | Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title_short | Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge |
title_sort | automatic inference model construction for computer-aided diagnosis of lung nodule: explanation adequacy, inference accuracy, and experts’ knowledge |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239329/ https://www.ncbi.nlm.nih.gov/pubmed/30444907 http://dx.doi.org/10.1371/journal.pone.0207661 |
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