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Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge

We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation a...

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Autores principales: Kawagishi, Masami, Kubo, Takeshi, Sakamoto, Ryo, Yakami, Masahiro, Fujimoto, Koji, Aoyama, Gakuto, Emoto, Yutaka, Sekiguchi, Hiroyuki, Sakai, Koji, Iizuka, Yoshio, Nishio, Mizuho, Yamamoto, Hiroyuki, Togashi, Kaori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239329/
https://www.ncbi.nlm.nih.gov/pubmed/30444907
http://dx.doi.org/10.1371/journal.pone.0207661
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author Kawagishi, Masami
Kubo, Takeshi
Sakamoto, Ryo
Yakami, Masahiro
Fujimoto, Koji
Aoyama, Gakuto
Emoto, Yutaka
Sekiguchi, Hiroyuki
Sakai, Koji
Iizuka, Yoshio
Nishio, Mizuho
Yamamoto, Hiroyuki
Togashi, Kaori
author_facet Kawagishi, Masami
Kubo, Takeshi
Sakamoto, Ryo
Yakami, Masahiro
Fujimoto, Koji
Aoyama, Gakuto
Emoto, Yutaka
Sekiguchi, Hiroyuki
Sakai, Koji
Iizuka, Yoshio
Nishio, Mizuho
Yamamoto, Hiroyuki
Togashi, Kaori
author_sort Kawagishi, Masami
collection PubMed
description We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation adequacy and inference accuracy. In addition, we evaluated the usefulness of prior experts’ (radiologists’) knowledge while constructing the models. In total, 179 patients with lung nodules were included and divided into 79 and 100 cases for training and test data, respectively. F-measure and accuracy were used to assess explanation adequacy and inference accuracy, respectively. For F-measure, reasons were defined as proper subsets of Evidence that had a strong influence on the inference result. The inference models were automatically constructed using the Bayesian network and Markov chain Monte Carlo methods, selecting only those models that met the predefined criteria. During model constructions, we examined the effect of including radiologist’s knowledge in the initial Bayesian network models. Performance of the best models in terms of F-measure, accuracy, and evaluation metric were as follows: 0.411, 72.0%, and 0.566, respectively, with prior knowledge, and 0.274, 65.0%, and 0.462, respectively, without prior knowledge. The best models with prior knowledge were then subjectively and independently evaluated by two radiologists using a 5-point scale, with 5, 3, and 1 representing beneficial, appropriate, and detrimental, respectively. The average scores by the two radiologists were 3.97 and 3.76 for the test data, indicating that the proposed computer-aided diagnosis system was acceptable to them. In conclusion, the proposed method incorporating radiologists’ knowledge could help in eliminating radiologists’ distrust of computer-aided diagnosis and improving its performance.
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spelling pubmed-62393292018-12-01 Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge Kawagishi, Masami Kubo, Takeshi Sakamoto, Ryo Yakami, Masahiro Fujimoto, Koji Aoyama, Gakuto Emoto, Yutaka Sekiguchi, Hiroyuki Sakai, Koji Iizuka, Yoshio Nishio, Mizuho Yamamoto, Hiroyuki Togashi, Kaori PLoS One Research Article We aimed to describe the development of an inference model for computer-aided diagnosis of lung nodules that could provide valid reasoning for any inferences, thereby improving the interpretability and performance of the system. An automatic construction method was used that considered explanation adequacy and inference accuracy. In addition, we evaluated the usefulness of prior experts’ (radiologists’) knowledge while constructing the models. In total, 179 patients with lung nodules were included and divided into 79 and 100 cases for training and test data, respectively. F-measure and accuracy were used to assess explanation adequacy and inference accuracy, respectively. For F-measure, reasons were defined as proper subsets of Evidence that had a strong influence on the inference result. The inference models were automatically constructed using the Bayesian network and Markov chain Monte Carlo methods, selecting only those models that met the predefined criteria. During model constructions, we examined the effect of including radiologist’s knowledge in the initial Bayesian network models. Performance of the best models in terms of F-measure, accuracy, and evaluation metric were as follows: 0.411, 72.0%, and 0.566, respectively, with prior knowledge, and 0.274, 65.0%, and 0.462, respectively, without prior knowledge. The best models with prior knowledge were then subjectively and independently evaluated by two radiologists using a 5-point scale, with 5, 3, and 1 representing beneficial, appropriate, and detrimental, respectively. The average scores by the two radiologists were 3.97 and 3.76 for the test data, indicating that the proposed computer-aided diagnosis system was acceptable to them. In conclusion, the proposed method incorporating radiologists’ knowledge could help in eliminating radiologists’ distrust of computer-aided diagnosis and improving its performance. Public Library of Science 2018-11-16 /pmc/articles/PMC6239329/ /pubmed/30444907 http://dx.doi.org/10.1371/journal.pone.0207661 Text en © 2018 Kawagishi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kawagishi, Masami
Kubo, Takeshi
Sakamoto, Ryo
Yakami, Masahiro
Fujimoto, Koji
Aoyama, Gakuto
Emoto, Yutaka
Sekiguchi, Hiroyuki
Sakai, Koji
Iizuka, Yoshio
Nishio, Mizuho
Yamamoto, Hiroyuki
Togashi, Kaori
Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title_full Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title_fullStr Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title_full_unstemmed Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title_short Automatic inference model construction for computer-aided diagnosis of lung nodule: Explanation adequacy, inference accuracy, and experts’ knowledge
title_sort automatic inference model construction for computer-aided diagnosis of lung nodule: explanation adequacy, inference accuracy, and experts’ knowledge
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239329/
https://www.ncbi.nlm.nih.gov/pubmed/30444907
http://dx.doi.org/10.1371/journal.pone.0207661
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