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Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals

Various chemical shift predictive methodologies have been studied and developed, but there remains the problem of prediction accuracy. Assigning the NMR signals of metabolic mixtures requires high predictive performance owing to the complexity of the signals. Here we propose a new predictive tool th...

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Autores principales: Ito, Kengo, Obuchi, Yuka, Chikayama, Eisuke, Date, Yasuhiro, Kikuchi, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Royal Society of Chemistry 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240814/
https://www.ncbi.nlm.nih.gov/pubmed/30542569
http://dx.doi.org/10.1039/c8sc03628d
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author Ito, Kengo
Obuchi, Yuka
Chikayama, Eisuke
Date, Yasuhiro
Kikuchi, Jun
author_facet Ito, Kengo
Obuchi, Yuka
Chikayama, Eisuke
Date, Yasuhiro
Kikuchi, Jun
author_sort Ito, Kengo
collection PubMed
description Various chemical shift predictive methodologies have been studied and developed, but there remains the problem of prediction accuracy. Assigning the NMR signals of metabolic mixtures requires high predictive performance owing to the complexity of the signals. Here we propose a new predictive tool that combines quantum chemistry and machine learning. A scaling factor as the objective variable to correct the errors of 2355 theoretical chemical shifts was optimized by exploring 91 machine learning algorithms and using the partial structure of 150 compounds as explanatory variables. The optimal predictive model gave RMSDs between experimental and predicted chemical shifts of 0.2177 ppm for δ(1)H and 3.3261 ppm for δ(13)C in the test data; thus, better accuracy was achieved compared with existing empirical and quantum chemical methods. The utility of the predictive model was demonstrated by applying it to assignments of experimental NMR signals of a complex metabolic mixture.
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spelling pubmed-62408142018-12-12 Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals Ito, Kengo Obuchi, Yuka Chikayama, Eisuke Date, Yasuhiro Kikuchi, Jun Chem Sci Chemistry Various chemical shift predictive methodologies have been studied and developed, but there remains the problem of prediction accuracy. Assigning the NMR signals of metabolic mixtures requires high predictive performance owing to the complexity of the signals. Here we propose a new predictive tool that combines quantum chemistry and machine learning. A scaling factor as the objective variable to correct the errors of 2355 theoretical chemical shifts was optimized by exploring 91 machine learning algorithms and using the partial structure of 150 compounds as explanatory variables. The optimal predictive model gave RMSDs between experimental and predicted chemical shifts of 0.2177 ppm for δ(1)H and 3.3261 ppm for δ(13)C in the test data; thus, better accuracy was achieved compared with existing empirical and quantum chemical methods. The utility of the predictive model was demonstrated by applying it to assignments of experimental NMR signals of a complex metabolic mixture. Royal Society of Chemistry 2018-09-10 /pmc/articles/PMC6240814/ /pubmed/30542569 http://dx.doi.org/10.1039/c8sc03628d Text en This journal is © The Royal Society of Chemistry 2018 http://creativecommons.org/licenses/by-nc/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution Non Commercial 3.0 Unported Licence (CC BY-NC 3.0)
spellingShingle Chemistry
Ito, Kengo
Obuchi, Yuka
Chikayama, Eisuke
Date, Yasuhiro
Kikuchi, Jun
Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title_full Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title_fullStr Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title_full_unstemmed Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title_short Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
title_sort exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6240814/
https://www.ncbi.nlm.nih.gov/pubmed/30542569
http://dx.doi.org/10.1039/c8sc03628d
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