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Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort

A case-control genetic association study was performed to investigate whether variant rs7916697 in atonal bHLH transcription factor 7 (ATOH7), which has been previously reported to be associated with optic disc parameters and primary open angle glaucoma (POAG) in different ethnic groups, is a risk f...

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Autores principales: Kondkar, Altaf A., Azad, Taif A., Almobarak, Faisal A., Bahabri, Ibrahim M., Kalantan, Hatem, Abu-Amero, Khaled K., Al-Obeidan, Saleh A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6241241/
https://www.ncbi.nlm.nih.gov/pubmed/30519491
http://dx.doi.org/10.1155/2018/2148056
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author Kondkar, Altaf A.
Azad, Taif A.
Almobarak, Faisal A.
Bahabri, Ibrahim M.
Kalantan, Hatem
Abu-Amero, Khaled K.
Al-Obeidan, Saleh A.
author_facet Kondkar, Altaf A.
Azad, Taif A.
Almobarak, Faisal A.
Bahabri, Ibrahim M.
Kalantan, Hatem
Abu-Amero, Khaled K.
Al-Obeidan, Saleh A.
author_sort Kondkar, Altaf A.
collection PubMed
description A case-control genetic association study was performed to investigate whether variant rs7916697 in atonal bHLH transcription factor 7 (ATOH7), which has been previously reported to be associated with optic disc parameters and primary open angle glaucoma (POAG) in different ethnic groups, is a risk factor for POAG or any of its clinical phenotypes in a Saudi cohort. Genotyping of rs7916697 (G>A) variant was performed in 186 unrelated POAG cases and 171 unrelated nonglaucomatous controls of Saudi origin using real-time Taq-Man® assay. Genotypic and allelic association with POAG and its related clinical indices were evaluated. Demographic and systemic disease status did not differ significantly between POAG cases and controls. Association analysis between POAG cases and controls showed no significant genotype effect under additive (p=0.707), dominant (p=0.458), and recessive (p=0.554) models. Besides, the minor ‘A' allele frequency was 0.39 in POAG cases and 0.36 in controls with no significant distribution (p=0.406). In addition, there was no significant difference between genotypes and clinical phenotypes such as intraocular pressure and cup/disc ratio within the POAG group, or any age and sex adjusted genotype effect on the disease outcome in regression analysis. Variant rs7916697 in ATOH7 is not associated with POAG or its clinical indices such as IOP and cup/disc ratio in a Saudi cohort.
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spelling pubmed-62412412018-12-05 Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort Kondkar, Altaf A. Azad, Taif A. Almobarak, Faisal A. Bahabri, Ibrahim M. Kalantan, Hatem Abu-Amero, Khaled K. Al-Obeidan, Saleh A. Genet Res Int Research Article A case-control genetic association study was performed to investigate whether variant rs7916697 in atonal bHLH transcription factor 7 (ATOH7), which has been previously reported to be associated with optic disc parameters and primary open angle glaucoma (POAG) in different ethnic groups, is a risk factor for POAG or any of its clinical phenotypes in a Saudi cohort. Genotyping of rs7916697 (G>A) variant was performed in 186 unrelated POAG cases and 171 unrelated nonglaucomatous controls of Saudi origin using real-time Taq-Man® assay. Genotypic and allelic association with POAG and its related clinical indices were evaluated. Demographic and systemic disease status did not differ significantly between POAG cases and controls. Association analysis between POAG cases and controls showed no significant genotype effect under additive (p=0.707), dominant (p=0.458), and recessive (p=0.554) models. Besides, the minor ‘A' allele frequency was 0.39 in POAG cases and 0.36 in controls with no significant distribution (p=0.406). In addition, there was no significant difference between genotypes and clinical phenotypes such as intraocular pressure and cup/disc ratio within the POAG group, or any age and sex adjusted genotype effect on the disease outcome in regression analysis. Variant rs7916697 in ATOH7 is not associated with POAG or its clinical indices such as IOP and cup/disc ratio in a Saudi cohort. Hindawi 2018-11-01 /pmc/articles/PMC6241241/ /pubmed/30519491 http://dx.doi.org/10.1155/2018/2148056 Text en Copyright © 2018 Altaf A. Kondkar et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Kondkar, Altaf A.
Azad, Taif A.
Almobarak, Faisal A.
Bahabri, Ibrahim M.
Kalantan, Hatem
Abu-Amero, Khaled K.
Al-Obeidan, Saleh A.
Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title_full Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title_fullStr Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title_full_unstemmed Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title_short Lack of Association between Variant rs7916697 in ATOH7 and Primary Open Angle Glaucoma in a Saudi Cohort
title_sort lack of association between variant rs7916697 in atoh7 and primary open angle glaucoma in a saudi cohort
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6241241/
https://www.ncbi.nlm.nih.gov/pubmed/30519491
http://dx.doi.org/10.1155/2018/2148056
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