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Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean

The seminal participation of WRKY transcription factors in plant development, metabolism and in the governance of defense mechanism implicated their gaining importance for genomic and functional studies. The recent release of draft genome sequences of two legume crops, Adzuki bean (Vigna angularis)...

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Autores principales: Srivastava, Richa, Kumar, Sanjeev, Kobayashi, Yasufumi, Kusunoki, Kazutaka, Tripathi, Prateek, Kobayashi, Yuriko, Koyama, Hiroyuki, Sahoo, Lingaraj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6243003/
https://www.ncbi.nlm.nih.gov/pubmed/30451872
http://dx.doi.org/10.1038/s41598-018-34920-8
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author Srivastava, Richa
Kumar, Sanjeev
Kobayashi, Yasufumi
Kusunoki, Kazutaka
Tripathi, Prateek
Kobayashi, Yuriko
Koyama, Hiroyuki
Sahoo, Lingaraj
author_facet Srivastava, Richa
Kumar, Sanjeev
Kobayashi, Yasufumi
Kusunoki, Kazutaka
Tripathi, Prateek
Kobayashi, Yuriko
Koyama, Hiroyuki
Sahoo, Lingaraj
author_sort Srivastava, Richa
collection PubMed
description The seminal participation of WRKY transcription factors in plant development, metabolism and in the governance of defense mechanism implicated their gaining importance for genomic and functional studies. The recent release of draft genome sequences of two legume crops, Adzuki bean (Vigna angularis) and Mung bean (Vigna radiata) has paved the way for characterization of WRKY gene family in these crops. We found 84 WRKY genes in Adzuki bean (VaWRKY) and 85 WRKY genes in Mung bean (VrWRKY). Based on the phylogenetic analysis, VaWRKY genes were classified into three groups with 15 members in Group I, 56 members in Group II, and 13 members in Group III, which was comparable to VrWRKY distribution in Mung bean, 16, 56 and 13 members in Group I, II and III, respectively. The few tandem and segmental duplication events suggested that recent duplication plays no prominent role in the expansion VaWRKY and VrWRKY genes. The illustration of gene-structure and their encoded protein-domains further revealed the nature of WRKY proteins. Moreover, the identification of abiotic or biotic stress-responsive cis-regulatory elements in the promoter regions of some WRKY genes provides fundamental insights for their further implementation in stress-tolerance and genetic improvement of agronomic traits.
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spelling pubmed-62430032018-11-27 Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean Srivastava, Richa Kumar, Sanjeev Kobayashi, Yasufumi Kusunoki, Kazutaka Tripathi, Prateek Kobayashi, Yuriko Koyama, Hiroyuki Sahoo, Lingaraj Sci Rep Article The seminal participation of WRKY transcription factors in plant development, metabolism and in the governance of defense mechanism implicated their gaining importance for genomic and functional studies. The recent release of draft genome sequences of two legume crops, Adzuki bean (Vigna angularis) and Mung bean (Vigna radiata) has paved the way for characterization of WRKY gene family in these crops. We found 84 WRKY genes in Adzuki bean (VaWRKY) and 85 WRKY genes in Mung bean (VrWRKY). Based on the phylogenetic analysis, VaWRKY genes were classified into three groups with 15 members in Group I, 56 members in Group II, and 13 members in Group III, which was comparable to VrWRKY distribution in Mung bean, 16, 56 and 13 members in Group I, II and III, respectively. The few tandem and segmental duplication events suggested that recent duplication plays no prominent role in the expansion VaWRKY and VrWRKY genes. The illustration of gene-structure and their encoded protein-domains further revealed the nature of WRKY proteins. Moreover, the identification of abiotic or biotic stress-responsive cis-regulatory elements in the promoter regions of some WRKY genes provides fundamental insights for their further implementation in stress-tolerance and genetic improvement of agronomic traits. Nature Publishing Group UK 2018-11-19 /pmc/articles/PMC6243003/ /pubmed/30451872 http://dx.doi.org/10.1038/s41598-018-34920-8 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Srivastava, Richa
Kumar, Sanjeev
Kobayashi, Yasufumi
Kusunoki, Kazutaka
Tripathi, Prateek
Kobayashi, Yuriko
Koyama, Hiroyuki
Sahoo, Lingaraj
Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title_full Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title_fullStr Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title_full_unstemmed Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title_short Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean
title_sort comparative genome-wide analysis of wrky transcription factors in two asian legume crops: adzuki bean and mung bean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6243003/
https://www.ncbi.nlm.nih.gov/pubmed/30451872
http://dx.doi.org/10.1038/s41598-018-34920-8
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