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Ab initio structure determination from experimental fluctuation X-ray scattering data

Fluctuation X-ray scattering (FXS) is an emerging experimental technique in which X-ray solution scattering data are collected from particles in solution using ultrashort X-ray exposures generated by a free-electron laser (FEL). FXS experiments overcome the low data-to-parameter ratios associated wi...

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Autores principales: Pande, Kanupriya, Donatelli, Jeffrey J., Malmerberg, Erik, Foucar, Lutz, Bostedt, Christoph, Schlichting, Ilme, Zwart, Petrus H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6243272/
https://www.ncbi.nlm.nih.gov/pubmed/30373827
http://dx.doi.org/10.1073/pnas.1812064115
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author Pande, Kanupriya
Donatelli, Jeffrey J.
Malmerberg, Erik
Foucar, Lutz
Bostedt, Christoph
Schlichting, Ilme
Zwart, Petrus H.
author_facet Pande, Kanupriya
Donatelli, Jeffrey J.
Malmerberg, Erik
Foucar, Lutz
Bostedt, Christoph
Schlichting, Ilme
Zwart, Petrus H.
author_sort Pande, Kanupriya
collection PubMed
description Fluctuation X-ray scattering (FXS) is an emerging experimental technique in which X-ray solution scattering data are collected from particles in solution using ultrashort X-ray exposures generated by a free-electron laser (FEL). FXS experiments overcome the low data-to-parameter ratios associated with traditional solution scattering measurements by providing several orders of magnitude more information in the final processed data. Here we demonstrate the practical feasibility of FEL-based FXS on a biological multiple-particle system and describe data-processing techniques required to extract robust FXS data and significantly reduce the required number of snapshots needed by introducing an iterative noise-filtering technique. We showcase a successful ab initio electron density reconstruction from such an experiment, studying the Paramecium bursaria Chlorella virus (PBCV-1).
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spelling pubmed-62432722018-11-27 Ab initio structure determination from experimental fluctuation X-ray scattering data Pande, Kanupriya Donatelli, Jeffrey J. Malmerberg, Erik Foucar, Lutz Bostedt, Christoph Schlichting, Ilme Zwart, Petrus H. Proc Natl Acad Sci U S A Biological Sciences Fluctuation X-ray scattering (FXS) is an emerging experimental technique in which X-ray solution scattering data are collected from particles in solution using ultrashort X-ray exposures generated by a free-electron laser (FEL). FXS experiments overcome the low data-to-parameter ratios associated with traditional solution scattering measurements by providing several orders of magnitude more information in the final processed data. Here we demonstrate the practical feasibility of FEL-based FXS on a biological multiple-particle system and describe data-processing techniques required to extract robust FXS data and significantly reduce the required number of snapshots needed by introducing an iterative noise-filtering technique. We showcase a successful ab initio electron density reconstruction from such an experiment, studying the Paramecium bursaria Chlorella virus (PBCV-1). National Academy of Sciences 2018-11-13 2018-10-29 /pmc/articles/PMC6243272/ /pubmed/30373827 http://dx.doi.org/10.1073/pnas.1812064115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Biological Sciences
Pande, Kanupriya
Donatelli, Jeffrey J.
Malmerberg, Erik
Foucar, Lutz
Bostedt, Christoph
Schlichting, Ilme
Zwart, Petrus H.
Ab initio structure determination from experimental fluctuation X-ray scattering data
title Ab initio structure determination from experimental fluctuation X-ray scattering data
title_full Ab initio structure determination from experimental fluctuation X-ray scattering data
title_fullStr Ab initio structure determination from experimental fluctuation X-ray scattering data
title_full_unstemmed Ab initio structure determination from experimental fluctuation X-ray scattering data
title_short Ab initio structure determination from experimental fluctuation X-ray scattering data
title_sort ab initio structure determination from experimental fluctuation x-ray scattering data
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6243272/
https://www.ncbi.nlm.nih.gov/pubmed/30373827
http://dx.doi.org/10.1073/pnas.1812064115
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