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Manifold learning and maximum likelihood estimation for hyperbolic network embedding
The Popularity-Similarity (PS) model sustains that clustering and hierarchy, properties common to most networks representing complex systems, are the result of an optimisation process in which nodes seek to form ties, not only with the most connected (popular) system components, but also with those...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245200/ https://www.ncbi.nlm.nih.gov/pubmed/30533502 http://dx.doi.org/10.1007/s41109-016-0013-0 |
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author | Alanis-Lobato, Gregorio Mier, Pablo Andrade-Navarro, Miguel A. |
author_facet | Alanis-Lobato, Gregorio Mier, Pablo Andrade-Navarro, Miguel A. |
author_sort | Alanis-Lobato, Gregorio |
collection | PubMed |
description | The Popularity-Similarity (PS) model sustains that clustering and hierarchy, properties common to most networks representing complex systems, are the result of an optimisation process in which nodes seek to form ties, not only with the most connected (popular) system components, but also with those that are similar to them. This model has a geometric interpretation in hyperbolic space, where distances between nodes abstract popularity-similarity trade-offs and the formation of scale-free and strongly clustered networks can be accurately described. Current methods for mapping networks to hyperbolic space are based on maximum likelihood estimations or manifold learning. The former approach is very accurate but slow; the latter improves efficiency at the cost of accuracy. Here, we analyse the strengths and limitations of both strategies and assess the advantages of combining them to efficiently embed big networks, allowing for their examination from a geometric perspective. Our evaluations in artificial and real networks support the idea that hyperbolic distance constraints play a significant role in the formation of edges between nodes. This means that challenging problems in network science, like link prediction or community detection, could be more easily addressed under this geometric framework. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s41109-016-0013-0) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6245200 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-62452002018-12-06 Manifold learning and maximum likelihood estimation for hyperbolic network embedding Alanis-Lobato, Gregorio Mier, Pablo Andrade-Navarro, Miguel A. Appl Netw Sci Research The Popularity-Similarity (PS) model sustains that clustering and hierarchy, properties common to most networks representing complex systems, are the result of an optimisation process in which nodes seek to form ties, not only with the most connected (popular) system components, but also with those that are similar to them. This model has a geometric interpretation in hyperbolic space, where distances between nodes abstract popularity-similarity trade-offs and the formation of scale-free and strongly clustered networks can be accurately described. Current methods for mapping networks to hyperbolic space are based on maximum likelihood estimations or manifold learning. The former approach is very accurate but slow; the latter improves efficiency at the cost of accuracy. Here, we analyse the strengths and limitations of both strategies and assess the advantages of combining them to efficiently embed big networks, allowing for their examination from a geometric perspective. Our evaluations in artificial and real networks support the idea that hyperbolic distance constraints play a significant role in the formation of edges between nodes. This means that challenging problems in network science, like link prediction or community detection, could be more easily addressed under this geometric framework. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s41109-016-0013-0) contains supplementary material, which is available to authorized users. Springer International Publishing 2016-11-15 2016 /pmc/articles/PMC6245200/ /pubmed/30533502 http://dx.doi.org/10.1007/s41109-016-0013-0 Text en © The Author(s) 2016 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Research Alanis-Lobato, Gregorio Mier, Pablo Andrade-Navarro, Miguel A. Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title | Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title_full | Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title_fullStr | Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title_full_unstemmed | Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title_short | Manifold learning and maximum likelihood estimation for hyperbolic network embedding |
title_sort | manifold learning and maximum likelihood estimation for hyperbolic network embedding |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245200/ https://www.ncbi.nlm.nih.gov/pubmed/30533502 http://dx.doi.org/10.1007/s41109-016-0013-0 |
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