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Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma

Lung adenocarcinoma (LUAD) is a common diagnosed disease with high‐mortality rate, and its prognostic implications are under discovered. DNA methylation aberrations are not only an important event for dysregulation of gene expression during tumorigenesis but also a revolution in epigenetics by ident...

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Autores principales: He, Wei, Ju, Dandan, Jie, Zhijun, Zhang, Ai, Xing, Xin, Yang, Qin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6246931/
https://www.ncbi.nlm.nih.gov/pubmed/30353687
http://dx.doi.org/10.1002/cam4.1834
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author He, Wei
Ju, Dandan
Jie, Zhijun
Zhang, Ai
Xing, Xin
Yang, Qin
author_facet He, Wei
Ju, Dandan
Jie, Zhijun
Zhang, Ai
Xing, Xin
Yang, Qin
author_sort He, Wei
collection PubMed
description Lung adenocarcinoma (LUAD) is a common diagnosed disease with high‐mortality rate, and its prognostic implications are under discovered. DNA methylation aberrations are not only an important event for dysregulation of gene expression during tumorigenesis but also a revolution in epigenetics by identifying key prognostic biomarkers for multiple cancers. In this study, we analyzed methylation status of 485 578 CpG sites and RNA‐seq transcriptomes of 20 532 genes for 1095 LUAD samples in TCGA database. The association between DNA methylation and the prognostic value of the corresponding gene expression was identified as well. In total, ten aberrantly methylated and dysregulated genes (AURKA, BLK, CNTN2, HMGA1, PTTG1, TNS4, DAPK2, MFSD2A, THSD1, and WNT7A) were highlighted which were significantly correlated with overall survival of 492 LUAD patients, which were all reported as tumor‐associated genes in other various cancers and worthy of further investigated and might be used as therapeutic targets for LUAD. Together, methylation aberrances regulate gene expression level during tumorigenesis and influence prognosis of LUAD patients. Integrating knowledge of epigenetics and expression of genes can be useful for an in‐depth understanding of cancer mechanism and for the eventual purpose of precisely prognostic and therapeutic target verification.
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spelling pubmed-62469312018-11-26 Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma He, Wei Ju, Dandan Jie, Zhijun Zhang, Ai Xing, Xin Yang, Qin Cancer Med Cancer Biology Lung adenocarcinoma (LUAD) is a common diagnosed disease with high‐mortality rate, and its prognostic implications are under discovered. DNA methylation aberrations are not only an important event for dysregulation of gene expression during tumorigenesis but also a revolution in epigenetics by identifying key prognostic biomarkers for multiple cancers. In this study, we analyzed methylation status of 485 578 CpG sites and RNA‐seq transcriptomes of 20 532 genes for 1095 LUAD samples in TCGA database. The association between DNA methylation and the prognostic value of the corresponding gene expression was identified as well. In total, ten aberrantly methylated and dysregulated genes (AURKA, BLK, CNTN2, HMGA1, PTTG1, TNS4, DAPK2, MFSD2A, THSD1, and WNT7A) were highlighted which were significantly correlated with overall survival of 492 LUAD patients, which were all reported as tumor‐associated genes in other various cancers and worthy of further investigated and might be used as therapeutic targets for LUAD. Together, methylation aberrances regulate gene expression level during tumorigenesis and influence prognosis of LUAD patients. Integrating knowledge of epigenetics and expression of genes can be useful for an in‐depth understanding of cancer mechanism and for the eventual purpose of precisely prognostic and therapeutic target verification. John Wiley and Sons Inc. 2018-10-23 /pmc/articles/PMC6246931/ /pubmed/30353687 http://dx.doi.org/10.1002/cam4.1834 Text en © 2018 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
He, Wei
Ju, Dandan
Jie, Zhijun
Zhang, Ai
Xing, Xin
Yang, Qin
Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title_full Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title_fullStr Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title_full_unstemmed Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title_short Aberrant CpG‐methylation affects genes expression predicting survival in lung adenocarcinoma
title_sort aberrant cpg‐methylation affects genes expression predicting survival in lung adenocarcinoma
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6246931/
https://www.ncbi.nlm.nih.gov/pubmed/30353687
http://dx.doi.org/10.1002/cam4.1834
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