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In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high tempera...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247816/ https://www.ncbi.nlm.nih.gov/pubmed/30487785 http://dx.doi.org/10.3389/fmicb.2018.02743 |
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author | Díaz, Rubén Díaz-Godínez, Gerardo Anducho-Reyes, Miguel Angel Mercado-Flores, Yuridia Herrera-Zúñiga, Leonardo David |
author_facet | Díaz, Rubén Díaz-Godínez, Gerardo Anducho-Reyes, Miguel Angel Mercado-Flores, Yuridia Herrera-Zúñiga, Leonardo David |
author_sort | Díaz, Rubén |
collection | PubMed |
description | Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high temperatures can cause partial or total loss of enzymatic activity, so it is appropriate to do research to modify their secondary and/or tertiary structure to make them more resistant to extreme temperature conditions. In silico, a structure of the Lacc 6 enzyme of Pleurotus ostreatus was constructed using a laccase of Trametes versicolor as a template. From this structure, 16 mutants with possible resistance at high temperature due to ionic interactions, salt bridges and disulfide bonds were also obtained in silico. It was determined that 12 mutants called 4-DB, 3-DB, D233C-T310C, F468P, 3-SB, L132T, N79D, N372D, P203C, P203V, T147E, and W85F, presented the lowest thermodynamic energy. Based on the previous criterion and determining the least flexibility in the protein structures, three mutants (4-DB, 3-DB, and P203C) were selected, which may present high stability at high temperatures without affecting their active site. The obtained results allow the understanding of the molecular base that increase the structural stability of the enzyme Lacc 6 of Pleurotus ostreatus, achieving the in silico generation of mutants, which could have activity at high temperatures. |
format | Online Article Text |
id | pubmed-6247816 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-62478162018-11-28 In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus Díaz, Rubén Díaz-Godínez, Gerardo Anducho-Reyes, Miguel Angel Mercado-Flores, Yuridia Herrera-Zúñiga, Leonardo David Front Microbiol Microbiology Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high temperatures can cause partial or total loss of enzymatic activity, so it is appropriate to do research to modify their secondary and/or tertiary structure to make them more resistant to extreme temperature conditions. In silico, a structure of the Lacc 6 enzyme of Pleurotus ostreatus was constructed using a laccase of Trametes versicolor as a template. From this structure, 16 mutants with possible resistance at high temperature due to ionic interactions, salt bridges and disulfide bonds were also obtained in silico. It was determined that 12 mutants called 4-DB, 3-DB, D233C-T310C, F468P, 3-SB, L132T, N79D, N372D, P203C, P203V, T147E, and W85F, presented the lowest thermodynamic energy. Based on the previous criterion and determining the least flexibility in the protein structures, three mutants (4-DB, 3-DB, and P203C) were selected, which may present high stability at high temperatures without affecting their active site. The obtained results allow the understanding of the molecular base that increase the structural stability of the enzyme Lacc 6 of Pleurotus ostreatus, achieving the in silico generation of mutants, which could have activity at high temperatures. Frontiers Media S.A. 2018-11-14 /pmc/articles/PMC6247816/ /pubmed/30487785 http://dx.doi.org/10.3389/fmicb.2018.02743 Text en Copyright © 2018 Díaz, Díaz-Godínez, Anducho-Reyes, Mercado-Flores and Herrera-Zúñiga. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Díaz, Rubén Díaz-Godínez, Gerardo Anducho-Reyes, Miguel Angel Mercado-Flores, Yuridia Herrera-Zúñiga, Leonardo David In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title | In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title_full | In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title_fullStr | In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title_full_unstemmed | In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title_short | In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus |
title_sort | in silico design of laccase thermostable mutants from lacc 6 of pleurotus ostreatus |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247816/ https://www.ncbi.nlm.nih.gov/pubmed/30487785 http://dx.doi.org/10.3389/fmicb.2018.02743 |
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