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In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus

Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high tempera...

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Autores principales: Díaz, Rubén, Díaz-Godínez, Gerardo, Anducho-Reyes, Miguel Angel, Mercado-Flores, Yuridia, Herrera-Zúñiga, Leonardo David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247816/
https://www.ncbi.nlm.nih.gov/pubmed/30487785
http://dx.doi.org/10.3389/fmicb.2018.02743
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author Díaz, Rubén
Díaz-Godínez, Gerardo
Anducho-Reyes, Miguel Angel
Mercado-Flores, Yuridia
Herrera-Zúñiga, Leonardo David
author_facet Díaz, Rubén
Díaz-Godínez, Gerardo
Anducho-Reyes, Miguel Angel
Mercado-Flores, Yuridia
Herrera-Zúñiga, Leonardo David
author_sort Díaz, Rubén
collection PubMed
description Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high temperatures can cause partial or total loss of enzymatic activity, so it is appropriate to do research to modify their secondary and/or tertiary structure to make them more resistant to extreme temperature conditions. In silico, a structure of the Lacc 6 enzyme of Pleurotus ostreatus was constructed using a laccase of Trametes versicolor as a template. From this structure, 16 mutants with possible resistance at high temperature due to ionic interactions, salt bridges and disulfide bonds were also obtained in silico. It was determined that 12 mutants called 4-DB, 3-DB, D233C-T310C, F468P, 3-SB, L132T, N79D, N372D, P203C, P203V, T147E, and W85F, presented the lowest thermodynamic energy. Based on the previous criterion and determining the least flexibility in the protein structures, three mutants (4-DB, 3-DB, and P203C) were selected, which may present high stability at high temperatures without affecting their active site. The obtained results allow the understanding of the molecular base that increase the structural stability of the enzyme Lacc 6 of Pleurotus ostreatus, achieving the in silico generation of mutants, which could have activity at high temperatures.
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spelling pubmed-62478162018-11-28 In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus Díaz, Rubén Díaz-Godínez, Gerardo Anducho-Reyes, Miguel Angel Mercado-Flores, Yuridia Herrera-Zúñiga, Leonardo David Front Microbiol Microbiology Fungal laccase enzymes have a great biotechnological potential for bioremediation processes due to their ability to degrade compounds such as ρ-diphenol, aminophenols, polyphenols, polyamines, and aryldiamines. These enzymes have activity at different pH and temperature values, however, high temperatures can cause partial or total loss of enzymatic activity, so it is appropriate to do research to modify their secondary and/or tertiary structure to make them more resistant to extreme temperature conditions. In silico, a structure of the Lacc 6 enzyme of Pleurotus ostreatus was constructed using a laccase of Trametes versicolor as a template. From this structure, 16 mutants with possible resistance at high temperature due to ionic interactions, salt bridges and disulfide bonds were also obtained in silico. It was determined that 12 mutants called 4-DB, 3-DB, D233C-T310C, F468P, 3-SB, L132T, N79D, N372D, P203C, P203V, T147E, and W85F, presented the lowest thermodynamic energy. Based on the previous criterion and determining the least flexibility in the protein structures, three mutants (4-DB, 3-DB, and P203C) were selected, which may present high stability at high temperatures without affecting their active site. The obtained results allow the understanding of the molecular base that increase the structural stability of the enzyme Lacc 6 of Pleurotus ostreatus, achieving the in silico generation of mutants, which could have activity at high temperatures. Frontiers Media S.A. 2018-11-14 /pmc/articles/PMC6247816/ /pubmed/30487785 http://dx.doi.org/10.3389/fmicb.2018.02743 Text en Copyright © 2018 Díaz, Díaz-Godínez, Anducho-Reyes, Mercado-Flores and Herrera-Zúñiga. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Díaz, Rubén
Díaz-Godínez, Gerardo
Anducho-Reyes, Miguel Angel
Mercado-Flores, Yuridia
Herrera-Zúñiga, Leonardo David
In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title_full In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title_fullStr In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title_full_unstemmed In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title_short In silico Design of Laccase Thermostable Mutants From Lacc 6 of Pleurotus Ostreatus
title_sort in silico design of laccase thermostable mutants from lacc 6 of pleurotus ostreatus
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247816/
https://www.ncbi.nlm.nih.gov/pubmed/30487785
http://dx.doi.org/10.3389/fmicb.2018.02743
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