Cargando…

MolArt: a molecular structure annotation and visualization tool

SUMMARY: MolArt fills the gap between sequence and structure visualization by providing a light-weight, interactive environment enabling exploration of sequence annotations in the context of available experimental or predicted protein structures. Provided a UniProt ID, MolArt downloads and displays...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hoksza, David, Gawron, Piotr, Ostaszewski, Marek, Schneider, Reinhard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247942/ https://www.ncbi.nlm.nih.gov/pubmed/29931246 http://dx.doi.org/10.1093/bioinformatics/bty489

Ejemplares similares

MINERVA API and plugins: opening molecular network analysis and visualization to the community
por: Hoksza, David, et al.
Publicado: (2019)

BlendMol: advanced macromolecular visualization in Blender
por: Durrant, Jacob D
Publicado: (2019)

RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics
por: Del Conte, Alessio, et al.
Publicado: (2023)

Closing the gap between formats for storing layout information in systems biology
por: Hoksza, David, et al.
Publicado: (2019)

ReconMap: an interactive visualization of human metabolism
por: Noronha, Alberto, et al.
Publicado: (2017)

OnTheFly: a tool for automated document-based text annotation, data linking and network generation
por: Pavlopoulos, Georgios A., et al.
Publicado: (2009)

NORMA: The Network Makeup Artist — A Web Tool for Network Annotation Visualization
por: Koutrouli, Mikaela, et al.
Publicado: (2022)

PanViz: interactive visualization of the structure of functionally annotated pangenomes
por: Pedersen, Thomas Lin, et al.
Publicado: (2017)

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data
por: Asmann, Yan W., et al.
Publicado: (2012)

Enabling a fast annotation process with the Table2Annotation tool
por: Larmande, Pierre, et al.
Publicado: (2020)

PyPCN: protein contact networks in PyMOL
por: Rosignoli, Serena, et al.
Publicado: (2023)

LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations
por: Dadaev, Tokhir, et al.
Publicado: (2016)

Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies
por: Vega, Carlos, et al.
Publicado: (2022)

ProtVista: visualization of protein sequence annotations
por: Watkins, Xavier, et al.
Publicado: (2017)

AHoJ: rapid, tailored search and retrieval of apo and holo protein structures for user-defined ligands
por: Feidakis, Christos P, et al.
Publicado: (2022)

molBLOCKS: decomposing small molecule sets and uncovering enriched fragments
por: Ghersi, Dario, et al.
Publicado: (2014)

SVA: software for annotating and visualizing sequenced human genomes
por: Ge, Dongliang, et al.
Publicado: (2011)

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB
por: Bittrich, Sebastian, et al.
Publicado: (2021)

VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations
por: Stephenson, James D, et al.
Publicado: (2019)

Pharokka: a fast scalable bacteriophage annotation tool
por: Bouras, George, et al.
Publicado: (2022)

MolClustPy: a Python package to characterize multivalent biomolecular clusters
por: Chattaraj, Aniruddha, et al.
Publicado: (2023)

Exploration and comparison of molecular mechanisms across diseases using MINERVA Net
por: Gawron, Piotr, et al.
Publicado: (2023)

MSABrowser: dynamic and fast visualization of sequence alignments, variations and annotations
por: Torun, Furkan M, et al.
Publicado: (2021)

PanTools v3: functional annotation, classification and phylogenomics
por: Jonkheer, Eef M, et al.
Publicado: (2022)

The MI bundle: enabling network and structural biology in genome visualization tools
por: Céol, Arnaud, et al.
Publicado: (2015)

VPOT: A Customizable Variant Prioritization Ordering Tool for Annotated Variants
por: Ip, Eddie, et al.
Publicado: (2019)

SEABED: Small molEcule activity scanner weB servicE baseD
por: Fenollosa, Carlos, et al.
Publicado: (2015)

TnT: a set of libraries for visualizing trees and track-based annotations for the web
por: Pignatelli, Miguel
Publicado: (2016)

Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny
por: Cleary, Alan, et al.
Publicado: (2017)

NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID
por: Gaudreault, Francis, et al.
Publicado: (2015)

Annotare—a tool for annotating high-throughput biomedical investigations and resulting data
por: Shankar, Ravi, et al.
Publicado: (2010)

MOAT: efficient detection of highly mutated regions with the Mutations Overburdening Annotations Tool
por: Lochovsky, Lucas, et al.
Publicado: (2018)

peaks2utr: a robust Python tool for the annotation of 3′ UTRs
por: Haese-Hill, William, et al.
Publicado: (2023)

SODA: a TypeScript/JavaScript library for visualizing biological sequence annotation
por: Roddy, Jack W, et al.
Publicado: (2022)

jClust: a clustering and visualization toolbox
por: Pavlopoulos, Georgios A., et al.
Publicado: (2009)

MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models
por: Wildenhain, Jan, et al.
Publicado: (2012)

AS-EAST: a functional annotation tool for putative proteins encoded by alternatively spliced transcripts
por: Shionyu, Masafumi, et al.
Publicado: (2012)

SCALOP: sequence-based antibody canonical loop structure annotation
por: Wong, Wing Ki, et al.
Publicado: (2019)

localpdb—a Python package to manage protein structures and their annotations
por: Ludwiczak, Jan, et al.
Publicado: (2022)

Integration of the PubAnnotation ecosystem in the development of a web-based search tool for alternative methods
por: Neves, Mariana
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_vj75o880cmsvqko2m6ji1cf9dj