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Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population

Previous studies have identified multiple loci for inherited susceptibility to glioma development, including the regulator of telomere elongation helicase 1 (RTEL1). However, the association between RTEL1 variants and risk of glioma has not been well understood. Therefore, we sought to comprehensive...

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Autores principales: Namgoong, Suhg, Cheong, Hyun Sub, Kim, Jeong-Hyun, Kim, Lyoung Hyo, Seo, Jung Yeon, Kang, Seok-Gu, Yoon, Seon-Jin, Kim, Se Hoon, Chang, Jong Hee, Shin, Hyoung Doo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6248978/
https://www.ncbi.nlm.nih.gov/pubmed/30462709
http://dx.doi.org/10.1371/journal.pone.0207660
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author Namgoong, Suhg
Cheong, Hyun Sub
Kim, Jeong-Hyun
Kim, Lyoung Hyo
Seo, Jung Yeon
Kang, Seok-Gu
Yoon, Seon-Jin
Kim, Se Hoon
Chang, Jong Hee
Shin, Hyoung Doo
author_facet Namgoong, Suhg
Cheong, Hyun Sub
Kim, Jeong-Hyun
Kim, Lyoung Hyo
Seo, Jung Yeon
Kang, Seok-Gu
Yoon, Seon-Jin
Kim, Se Hoon
Chang, Jong Hee
Shin, Hyoung Doo
author_sort Namgoong, Suhg
collection PubMed
description Previous studies have identified multiple loci for inherited susceptibility to glioma development, including the regulator of telomere elongation helicase 1 (RTEL1). However, the association between RTEL1 variants and risk of glioma has not been well understood. Therefore, we sought to comprehensively examine the genetic interaction between RTEL1 variants and risk of glioma with respect to defined histological and molecular subtypes. We employed a case-control study involving 250 adult glioma patients with previous molecular alterations and 375 population–based controls within Korean populations. Statistical analyses on the association between RTEL1 single nucleotide polymorphisms (SNPs) and glioma risk were conducted using unconditional logistic regression. Additional conditional and stepwise analyses were performed on significant RTEL1 SNPs. We detected significant associations (Bonferroni P < .05) between six SNPs (rs6089953, rs3848669, rs6010620, rs3787089, rs6062302, and rs115303435) and risk of glioma in the Korean subjects. The two coding variants, rs6062302 (D664D) and rs115303435 (A1059T), were plausibly causal variants and were independent among the significantly associated RTEL1 variants. The glioma subgroup analyses showed that the causal variants (rs6062302 and rs115303435) may be associated with increased risk of glioma regardless of histological grades and molecular alterations. This study provides a deeper understanding of relationships between RTEL1 variants and risk of glioma. Further studies are required to ascertain the impact of those variants on glioma susceptibility.
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spelling pubmed-62489782018-12-06 Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population Namgoong, Suhg Cheong, Hyun Sub Kim, Jeong-Hyun Kim, Lyoung Hyo Seo, Jung Yeon Kang, Seok-Gu Yoon, Seon-Jin Kim, Se Hoon Chang, Jong Hee Shin, Hyoung Doo PLoS One Research Article Previous studies have identified multiple loci for inherited susceptibility to glioma development, including the regulator of telomere elongation helicase 1 (RTEL1). However, the association between RTEL1 variants and risk of glioma has not been well understood. Therefore, we sought to comprehensively examine the genetic interaction between RTEL1 variants and risk of glioma with respect to defined histological and molecular subtypes. We employed a case-control study involving 250 adult glioma patients with previous molecular alterations and 375 population–based controls within Korean populations. Statistical analyses on the association between RTEL1 single nucleotide polymorphisms (SNPs) and glioma risk were conducted using unconditional logistic regression. Additional conditional and stepwise analyses were performed on significant RTEL1 SNPs. We detected significant associations (Bonferroni P < .05) between six SNPs (rs6089953, rs3848669, rs6010620, rs3787089, rs6062302, and rs115303435) and risk of glioma in the Korean subjects. The two coding variants, rs6062302 (D664D) and rs115303435 (A1059T), were plausibly causal variants and were independent among the significantly associated RTEL1 variants. The glioma subgroup analyses showed that the causal variants (rs6062302 and rs115303435) may be associated with increased risk of glioma regardless of histological grades and molecular alterations. This study provides a deeper understanding of relationships between RTEL1 variants and risk of glioma. Further studies are required to ascertain the impact of those variants on glioma susceptibility. Public Library of Science 2018-11-21 /pmc/articles/PMC6248978/ /pubmed/30462709 http://dx.doi.org/10.1371/journal.pone.0207660 Text en © 2018 Namgoong et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Namgoong, Suhg
Cheong, Hyun Sub
Kim, Jeong-Hyun
Kim, Lyoung Hyo
Seo, Jung Yeon
Kang, Seok-Gu
Yoon, Seon-Jin
Kim, Se Hoon
Chang, Jong Hee
Shin, Hyoung Doo
Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title_full Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title_fullStr Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title_full_unstemmed Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title_short Association analysis of RTEL1 variants with risk of adult gliomas in a Korean population
title_sort association analysis of rtel1 variants with risk of adult gliomas in a korean population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6248978/
https://www.ncbi.nlm.nih.gov/pubmed/30462709
http://dx.doi.org/10.1371/journal.pone.0207660
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