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A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans

The small roundworm Caenorhabditis elegans employs two strategies, termed pirouette and weathervane, which are closely related to the internal representation of chemical gradients parallel and perpendicular to the travelling direction, respectively, to perform chemotaxis. These gradients must be cal...

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Autores principales: Soh, Zu, Sakamoto, Kazuma, Suzuki, Michiyo, Iino, Yuichi, Tsuji, Toshio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249258/
https://www.ncbi.nlm.nih.gov/pubmed/30464313
http://dx.doi.org/10.1038/s41598-018-35157-1
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author Soh, Zu
Sakamoto, Kazuma
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
author_facet Soh, Zu
Sakamoto, Kazuma
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
author_sort Soh, Zu
collection PubMed
description The small roundworm Caenorhabditis elegans employs two strategies, termed pirouette and weathervane, which are closely related to the internal representation of chemical gradients parallel and perpendicular to the travelling direction, respectively, to perform chemotaxis. These gradients must be calculated from the chemical information obtained at a single point, because the sensory neurons are located close to each other at the nose tip. To formulate the relationship between this sensory input and internal representations of the chemical gradient, this study proposes a simple computational model derived from the directional decomposition of the chemical concentration at the nose tip that can generate internal representations of the chemical gradient. The ability of the computational model was verified by using a chemotaxis simulator that can simulate the body motions of pirouette and weathervane, which confirmed that the computational model enables the conversion of the sensory input and head-bending angles into both types of gradients with high correlations of approximately r > 0.90 (p < 0.01) with the true gradients. In addition, the chemotaxis index of the model was 0.64, which is slightly higher than that in the actual animal (0.57). In addition, simulation using a connectome-based neural network model confirmed that the proposed computational model is implementable in the actual network structure.
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spelling pubmed-62492582018-11-28 A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans Soh, Zu Sakamoto, Kazuma Suzuki, Michiyo Iino, Yuichi Tsuji, Toshio Sci Rep Article The small roundworm Caenorhabditis elegans employs two strategies, termed pirouette and weathervane, which are closely related to the internal representation of chemical gradients parallel and perpendicular to the travelling direction, respectively, to perform chemotaxis. These gradients must be calculated from the chemical information obtained at a single point, because the sensory neurons are located close to each other at the nose tip. To formulate the relationship between this sensory input and internal representations of the chemical gradient, this study proposes a simple computational model derived from the directional decomposition of the chemical concentration at the nose tip that can generate internal representations of the chemical gradient. The ability of the computational model was verified by using a chemotaxis simulator that can simulate the body motions of pirouette and weathervane, which confirmed that the computational model enables the conversion of the sensory input and head-bending angles into both types of gradients with high correlations of approximately r > 0.90 (p < 0.01) with the true gradients. In addition, the chemotaxis index of the model was 0.64, which is slightly higher than that in the actual animal (0.57). In addition, simulation using a connectome-based neural network model confirmed that the proposed computational model is implementable in the actual network structure. Nature Publishing Group UK 2018-11-21 /pmc/articles/PMC6249258/ /pubmed/30464313 http://dx.doi.org/10.1038/s41598-018-35157-1 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Soh, Zu
Sakamoto, Kazuma
Suzuki, Michiyo
Iino, Yuichi
Tsuji, Toshio
A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title_full A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title_fullStr A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title_full_unstemmed A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title_short A computational model of internal representations of chemical gradients in environments for chemotaxis of Caenorhabditis elegans
title_sort computational model of internal representations of chemical gradients in environments for chemotaxis of caenorhabditis elegans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249258/
https://www.ncbi.nlm.nih.gov/pubmed/30464313
http://dx.doi.org/10.1038/s41598-018-35157-1
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