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Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters

Putative heterotrophic bacteria carrying out N(2)-fixation, so-called non-cyanobacterial diazotrophs (NCDs), are widely distributed in marine waters, but details of how the O(2)-inhibited N(2)-fixation process is promoted in the oxic water column remains ambiguous. Here we carried out two experiment...

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Autores principales: Pedersen, Jeppe N., Bombar, Deniz, Paerl, Ryan W., Riemann, Lasse
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6250843/
https://www.ncbi.nlm.nih.gov/pubmed/30505296
http://dx.doi.org/10.3389/fmicb.2018.02759
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author Pedersen, Jeppe N.
Bombar, Deniz
Paerl, Ryan W.
Riemann, Lasse
author_facet Pedersen, Jeppe N.
Bombar, Deniz
Paerl, Ryan W.
Riemann, Lasse
author_sort Pedersen, Jeppe N.
collection PubMed
description Putative heterotrophic bacteria carrying out N(2)-fixation, so-called non-cyanobacterial diazotrophs (NCDs), are widely distributed in marine waters, but details of how the O(2)-inhibited N(2)-fixation process is promoted in the oxic water column remains ambiguous. Here we carried out two experiments with water from a eutrophic temperate fjord to examine whether low-oxygen microenvironments within particulate organic matter could be loci suitable for N(2)-fixation. First, water enriched with natural particles or sediment showed higher N(2)-fixation rates than bulk water, and nitrogenase genes (nifH) revealed that specific diazotrophs were affiliated with the particulate matter. Second, pristine artificial surfaces were rapidly colonized by diverse bacteria, while putative diazotrophs emerged relatively late (after 80 h) during the colonization, and phylotypes related to Pseudomonas and to anaerobic bacteria became dominant with time. Our study pinpoints natural particles as sites of N(2)-fixation, and indicates that resuspension of sediment material can elevate pelagic N(2)-fixation. Moreover, we show that diverse natural diazotrophs can colonize artificial surfaces, but colonization by “pioneer” bacterioplankton that more rapidly associate with surfaces appears to be a prerequisite. Whereas our experimental study supports the idea of pelagic particles as sites of N(2)-fixation by heterotrophic bacteria, future in situ studies are needed in order to establish identity, activity and ecology of particle associated NCDs as a function of individual particle characteristics.
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spelling pubmed-62508432018-11-30 Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters Pedersen, Jeppe N. Bombar, Deniz Paerl, Ryan W. Riemann, Lasse Front Microbiol Microbiology Putative heterotrophic bacteria carrying out N(2)-fixation, so-called non-cyanobacterial diazotrophs (NCDs), are widely distributed in marine waters, but details of how the O(2)-inhibited N(2)-fixation process is promoted in the oxic water column remains ambiguous. Here we carried out two experiments with water from a eutrophic temperate fjord to examine whether low-oxygen microenvironments within particulate organic matter could be loci suitable for N(2)-fixation. First, water enriched with natural particles or sediment showed higher N(2)-fixation rates than bulk water, and nitrogenase genes (nifH) revealed that specific diazotrophs were affiliated with the particulate matter. Second, pristine artificial surfaces were rapidly colonized by diverse bacteria, while putative diazotrophs emerged relatively late (after 80 h) during the colonization, and phylotypes related to Pseudomonas and to anaerobic bacteria became dominant with time. Our study pinpoints natural particles as sites of N(2)-fixation, and indicates that resuspension of sediment material can elevate pelagic N(2)-fixation. Moreover, we show that diverse natural diazotrophs can colonize artificial surfaces, but colonization by “pioneer” bacterioplankton that more rapidly associate with surfaces appears to be a prerequisite. Whereas our experimental study supports the idea of pelagic particles as sites of N(2)-fixation by heterotrophic bacteria, future in situ studies are needed in order to establish identity, activity and ecology of particle associated NCDs as a function of individual particle characteristics. Frontiers Media S.A. 2018-11-16 /pmc/articles/PMC6250843/ /pubmed/30505296 http://dx.doi.org/10.3389/fmicb.2018.02759 Text en Copyright © 2018 Pedersen, Bombar, Paerl and Riemann. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Pedersen, Jeppe N.
Bombar, Deniz
Paerl, Ryan W.
Riemann, Lasse
Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title_full Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title_fullStr Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title_full_unstemmed Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title_short Diazotrophs and N(2)-Fixation Associated With Particles in Coastal Estuarine Waters
title_sort diazotrophs and n(2)-fixation associated with particles in coastal estuarine waters
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6250843/
https://www.ncbi.nlm.nih.gov/pubmed/30505296
http://dx.doi.org/10.3389/fmicb.2018.02759
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