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An evolutionary algorithm for the discovery of porous organic cages
The chemical and structural space of possible molecular materials is enormous, as they can, in principle, be built from any combination of organic building blocks. Here we have developed an evolutionary algorithm (EA) that can assist in the efficient exploration of chemical space for molecular mater...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Royal Society of Chemistry
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251339/ https://www.ncbi.nlm.nih.gov/pubmed/30568775 http://dx.doi.org/10.1039/c8sc03560a |
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author | Berardo, Enrico Turcani, Lukas Miklitz, Marcin Jelfs, Kim E. |
author_facet | Berardo, Enrico Turcani, Lukas Miklitz, Marcin Jelfs, Kim E. |
author_sort | Berardo, Enrico |
collection | PubMed |
description | The chemical and structural space of possible molecular materials is enormous, as they can, in principle, be built from any combination of organic building blocks. Here we have developed an evolutionary algorithm (EA) that can assist in the efficient exploration of chemical space for molecular materials, helping to guide synthesis to materials with promising applications. We demonstrate the utility of our EA to porous organic cages, predicting both promising targets and identifying the chemical features that emerge as important for a cage to be shape persistent or to adopt a particular cavity size. We identify that shape persistent cages require a low percentage of rotatable bonds in their precursors (<20%) and that the higher topicity building block in particular should use double bonds for rigidity. We can use the EA to explore what size ranges for precursors are required for achieving a given pore size in a cage and show that 16 Å pores, which are absent in the literature, should be synthetically achievable. Our EA implementation is adaptable and easily extendable, not only to target specific properties of porous organic cages, such as optimal encapsulants or molecular separation materials, but also to any easily calculable property of other molecular materials. |
format | Online Article Text |
id | pubmed-6251339 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-62513392018-12-19 An evolutionary algorithm for the discovery of porous organic cages Berardo, Enrico Turcani, Lukas Miklitz, Marcin Jelfs, Kim E. Chem Sci Chemistry The chemical and structural space of possible molecular materials is enormous, as they can, in principle, be built from any combination of organic building blocks. Here we have developed an evolutionary algorithm (EA) that can assist in the efficient exploration of chemical space for molecular materials, helping to guide synthesis to materials with promising applications. We demonstrate the utility of our EA to porous organic cages, predicting both promising targets and identifying the chemical features that emerge as important for a cage to be shape persistent or to adopt a particular cavity size. We identify that shape persistent cages require a low percentage of rotatable bonds in their precursors (<20%) and that the higher topicity building block in particular should use double bonds for rigidity. We can use the EA to explore what size ranges for precursors are required for achieving a given pore size in a cage and show that 16 Å pores, which are absent in the literature, should be synthetically achievable. Our EA implementation is adaptable and easily extendable, not only to target specific properties of porous organic cages, such as optimal encapsulants or molecular separation materials, but also to any easily calculable property of other molecular materials. Royal Society of Chemistry 2018-09-11 /pmc/articles/PMC6251339/ /pubmed/30568775 http://dx.doi.org/10.1039/c8sc03560a Text en This journal is © The Royal Society of Chemistry 2018 http://creativecommons.org/licenses/by/3.0/ This article is freely available. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence (CC BY 3.0) |
spellingShingle | Chemistry Berardo, Enrico Turcani, Lukas Miklitz, Marcin Jelfs, Kim E. An evolutionary algorithm for the discovery of porous organic cages |
title | An evolutionary algorithm for the discovery of porous organic cages
|
title_full | An evolutionary algorithm for the discovery of porous organic cages
|
title_fullStr | An evolutionary algorithm for the discovery of porous organic cages
|
title_full_unstemmed | An evolutionary algorithm for the discovery of porous organic cages
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title_short | An evolutionary algorithm for the discovery of porous organic cages
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title_sort | evolutionary algorithm for the discovery of porous organic cages |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251339/ https://www.ncbi.nlm.nih.gov/pubmed/30568775 http://dx.doi.org/10.1039/c8sc03560a |
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