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2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children

BACKGROUND: Acinetobacter baumannii (AB) invasive infections are known to have a worse clinical outcome than non-baumannii Acinetobacter infections. However, currently, phenotypic identification by semi-automated commercial identification systems struggle to distinguish Acinetobacter subspecies; esp...

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Autores principales: Kang, Hyun Mi, Lee, Chan Jae, Lee, Hyeon Seung, Lee, Hyunju, Choi, Eun Hwa, Lee, Hoan Jong, Yun, Ki Wook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6254827/
http://dx.doi.org/10.1093/ofid/ofy210.1665
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author Kang, Hyun Mi
Lee, Chan Jae
Lee, Hyeon Seung
Lee, Hyunju
Choi, Eun Hwa
Lee, Hoan Jong
Yun, Ki Wook
author_facet Kang, Hyun Mi
Lee, Chan Jae
Lee, Hyeon Seung
Lee, Hyunju
Choi, Eun Hwa
Lee, Hoan Jong
Yun, Ki Wook
author_sort Kang, Hyun Mi
collection PubMed
description BACKGROUND: Acinetobacter baumannii (AB) invasive infections are known to have a worse clinical outcome than non-baumannii Acinetobacter infections. However, currently, phenotypic identification by semi-automated commercial identification systems struggle to distinguish Acinetobacter subspecies; especially the four closely related subspecies of the Acinetobacter calcoaceticus–Acinetobacter baumannii (ACB) complex. The purpose of this study was to examine the rate of misidentification of AB isolated from invasive infections in children. METHODS: From January 2001 to December 2017, patients 18 years old and below who were treated for invasive AB infections at Seoul National University Hospital and Chungnam National University Hospital were included. Acinetobacter baumannii, identified by commercial identification systems, cultured from sterile body fluids of the study participants were prospectively collected. The DNA from the stored bacteria were isolated, and subspecies identification was carried out by PCR and sequencing of the partial gyrB gene. Clinical data were retrospectively reviewed. RESULTS: During the 17-year study period, 113 AB isolates were obtained from patients treated for invasive infections. The median age of the patients was 2 (IQR 0–7) years old and 47 (49.5%) were male. Duplicate isolates were eliminated, and a total 95 isolates underwent further investigation. The isolates were retrieved from the blood (n = 82), peritoneal fluid (n = 8), pleural fluid (n = 2), cerebrospinal fluid (n = 2), and bronchoalveolar fluid (n = 1). Of the AB isolates identified by the commercial identification systems, 55 (57.9%) were AB. Of the non-AB isolates identified by partial gyrB sequencing, 22 (23.2%) were identified as A. nosocomialis, 8 (8.4%) as A. pittii, and 1 (1.1%) as A. calcoaceticus. Non-ACB complex subspecies included A. soli (n = 3), A. seifertii (n = 3), A. iwoffii (n = 1), A. bereziniae (n = 1), and A. junnii (n = 1). CONCLUSION: There was a high rate of misidentification of the Acinetobacter subspecies causing invasive infections in children. Further studies are needed to analyze the burden that misidentification has on the treatment and outcome of patients with invasive infections. DISCLOSURES: H. Lee, Korean Society of Pediatric Infectious Diseases: Member, Research grant.
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spelling pubmed-62548272018-11-28 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children Kang, Hyun Mi Lee, Chan Jae Lee, Hyeon Seung Lee, Hyunju Choi, Eun Hwa Lee, Hoan Jong Yun, Ki Wook Open Forum Infect Dis Abstracts BACKGROUND: Acinetobacter baumannii (AB) invasive infections are known to have a worse clinical outcome than non-baumannii Acinetobacter infections. However, currently, phenotypic identification by semi-automated commercial identification systems struggle to distinguish Acinetobacter subspecies; especially the four closely related subspecies of the Acinetobacter calcoaceticus–Acinetobacter baumannii (ACB) complex. The purpose of this study was to examine the rate of misidentification of AB isolated from invasive infections in children. METHODS: From January 2001 to December 2017, patients 18 years old and below who were treated for invasive AB infections at Seoul National University Hospital and Chungnam National University Hospital were included. Acinetobacter baumannii, identified by commercial identification systems, cultured from sterile body fluids of the study participants were prospectively collected. The DNA from the stored bacteria were isolated, and subspecies identification was carried out by PCR and sequencing of the partial gyrB gene. Clinical data were retrospectively reviewed. RESULTS: During the 17-year study period, 113 AB isolates were obtained from patients treated for invasive infections. The median age of the patients was 2 (IQR 0–7) years old and 47 (49.5%) were male. Duplicate isolates were eliminated, and a total 95 isolates underwent further investigation. The isolates were retrieved from the blood (n = 82), peritoneal fluid (n = 8), pleural fluid (n = 2), cerebrospinal fluid (n = 2), and bronchoalveolar fluid (n = 1). Of the AB isolates identified by the commercial identification systems, 55 (57.9%) were AB. Of the non-AB isolates identified by partial gyrB sequencing, 22 (23.2%) were identified as A. nosocomialis, 8 (8.4%) as A. pittii, and 1 (1.1%) as A. calcoaceticus. Non-ACB complex subspecies included A. soli (n = 3), A. seifertii (n = 3), A. iwoffii (n = 1), A. bereziniae (n = 1), and A. junnii (n = 1). CONCLUSION: There was a high rate of misidentification of the Acinetobacter subspecies causing invasive infections in children. Further studies are needed to analyze the burden that misidentification has on the treatment and outcome of patients with invasive infections. DISCLOSURES: H. Lee, Korean Society of Pediatric Infectious Diseases: Member, Research grant. Oxford University Press 2018-11-26 /pmc/articles/PMC6254827/ http://dx.doi.org/10.1093/ofid/ofy210.1665 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Kang, Hyun Mi
Lee, Chan Jae
Lee, Hyeon Seung
Lee, Hyunju
Choi, Eun Hwa
Lee, Hoan Jong
Yun, Ki Wook
2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title_full 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title_fullStr 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title_full_unstemmed 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title_short 2009. Misidentification Rate of Acinetobacter baumannii Isolated From Invasive Infections in Children
title_sort 2009. misidentification rate of acinetobacter baumannii isolated from invasive infections in children
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6254827/
http://dx.doi.org/10.1093/ofid/ofy210.1665
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