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810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing
BACKGROUND: The use of intra-vesicular Bacille Calmette-Guerin (BCG) for bladder cancer can result in disseminated/endovascular BCG infection. The diagnosis of BCGosis in this setting is complicated by the risks of biopsy of an endovascular focus and the long duration of acid-fast bacilli (AFB) cult...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255680/ http://dx.doi.org/10.1093/ofid/ofy210.817 |
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author | Cooper, Chris Hong, David Blair, Lily Bercovici, Sivan Ahmed, Asim |
author_facet | Cooper, Chris Hong, David Blair, Lily Bercovici, Sivan Ahmed, Asim |
author_sort | Cooper, Chris |
collection | PubMed |
description | BACKGROUND: The use of intra-vesicular Bacille Calmette-Guerin (BCG) for bladder cancer can result in disseminated/endovascular BCG infection. The diagnosis of BCGosis in this setting is complicated by the risks of biopsy of an endovascular focus and the long duration of acid-fast bacilli (AFB) cultures. METHODS: A 68-year-old male with a history of hypertension, aortic aneurysm (status post repair), and bladder cancer treated with intravesicular BCG complicated by BCGosis presented several years later with two weeks of fevers, chills, night sweats, and back pain. Computed tomography (CT) scan demonstrated aortitis with periaortic abscess. There was concern for BCG aortitis given the antecedent BCG exposure and prior BCGosis. Blood cultures were negative; AFB blood cultures were contaminated. A sample of plasma was sent to Karius (Redwood City, CA) for next-generation sequencing (NGS). Cell-free DNA was extracted and NGS performed. Human sequences were removed and remaining sequences were aligned to a curated pathogen database of >1,000 organisms. Organisms present above a statistical threshold were reported. The patient underwent surgical replacement of the infected endograft; endovascular samples were sent for AFB culture. RESULTS: Plasma-based NGS of cell free DNA detected M. tuberculosis (Mtb) complex at 48 hours (within 28 hours of sample receipt). Within the Mtb complex, the majority of sequences aligned to M. bovis with five reads aligning uniquely to M. bovis. No reads aligned to the region of deletion 1 (RD1) deleted in BCG. Surgical AFB cultures were positive for Mtb complex by PCR probe at nine days; Mtb complex was recovered in culture at 19 days. CONCLUSION: Plasma metagenomic sequencing can be used to rapidly diagnose BCG-associated endovascular infection. [Image: see text] DISCLOSURES: C. Cooper, Karius, Inc.: Consultant, Consulting fee. D. Hong, Karius, Inc.: Employee, Salary. L. Blair, Karius: Employee, Salary. S. Bercovici, Karius, Inc.: Employee, Salary. A. Ahmed, Karius, Inc.: Employee, Salary. |
format | Online Article Text |
id | pubmed-6255680 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-62556802018-11-28 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing Cooper, Chris Hong, David Blair, Lily Bercovici, Sivan Ahmed, Asim Open Forum Infect Dis Abstracts BACKGROUND: The use of intra-vesicular Bacille Calmette-Guerin (BCG) for bladder cancer can result in disseminated/endovascular BCG infection. The diagnosis of BCGosis in this setting is complicated by the risks of biopsy of an endovascular focus and the long duration of acid-fast bacilli (AFB) cultures. METHODS: A 68-year-old male with a history of hypertension, aortic aneurysm (status post repair), and bladder cancer treated with intravesicular BCG complicated by BCGosis presented several years later with two weeks of fevers, chills, night sweats, and back pain. Computed tomography (CT) scan demonstrated aortitis with periaortic abscess. There was concern for BCG aortitis given the antecedent BCG exposure and prior BCGosis. Blood cultures were negative; AFB blood cultures were contaminated. A sample of plasma was sent to Karius (Redwood City, CA) for next-generation sequencing (NGS). Cell-free DNA was extracted and NGS performed. Human sequences were removed and remaining sequences were aligned to a curated pathogen database of >1,000 organisms. Organisms present above a statistical threshold were reported. The patient underwent surgical replacement of the infected endograft; endovascular samples were sent for AFB culture. RESULTS: Plasma-based NGS of cell free DNA detected M. tuberculosis (Mtb) complex at 48 hours (within 28 hours of sample receipt). Within the Mtb complex, the majority of sequences aligned to M. bovis with five reads aligning uniquely to M. bovis. No reads aligned to the region of deletion 1 (RD1) deleted in BCG. Surgical AFB cultures were positive for Mtb complex by PCR probe at nine days; Mtb complex was recovered in culture at 19 days. CONCLUSION: Plasma metagenomic sequencing can be used to rapidly diagnose BCG-associated endovascular infection. [Image: see text] DISCLOSURES: C. Cooper, Karius, Inc.: Consultant, Consulting fee. D. Hong, Karius, Inc.: Employee, Salary. L. Blair, Karius: Employee, Salary. S. Bercovici, Karius, Inc.: Employee, Salary. A. Ahmed, Karius, Inc.: Employee, Salary. Oxford University Press 2018-11-26 /pmc/articles/PMC6255680/ http://dx.doi.org/10.1093/ofid/ofy210.817 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Abstracts Cooper, Chris Hong, David Blair, Lily Bercovici, Sivan Ahmed, Asim 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title | 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title_full | 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title_fullStr | 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title_full_unstemmed | 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title_short | 810. Diagnosis of BCG Aortitis by Plasma Metagenomic Sequencing |
title_sort | 810. diagnosis of bcg aortitis by plasma metagenomic sequencing |
topic | Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255680/ http://dx.doi.org/10.1093/ofid/ofy210.817 |
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