ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa

Like many taxa, the Zetaproteobacteria lack well-defined taxonomic divisions, making it difficult to compare them between studies. We designed ZetaHunter to reproducibly assign 16S rRNA gene sequences to previously described operational taxonomic units (OTUs) based on a curated database. While ZetaH...

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Detalles Bibliográficos
Autores principales: McAllister, Sean M., Moore, Ryan M., Chan, Clara S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Databases and Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256443/
https://www.ncbi.nlm.nih.gov/pubmed/30533906
http://dx.doi.org/10.1128/MRA.00932-18
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author McAllister, Sean M.
Moore, Ryan M.
Chan, Clara S.
author_facet McAllister, Sean M.
Moore, Ryan M.
Chan, Clara S.
author_sort McAllister, Sean M.
collection PubMed
description Like many taxa, the Zetaproteobacteria lack well-defined taxonomic divisions, making it difficult to compare them between studies. We designed ZetaHunter to reproducibly assign 16S rRNA gene sequences to previously described operational taxonomic units (OTUs) based on a curated database. While ZetaHunter can use any given database, we included a curated classification of publicly available Zetaproteobacteria.
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spelling pubmed-62564432018-12-07 ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa McAllister, Sean M. Moore, Ryan M. Chan, Clara S. Microbiol Resour Announc Databases and Software Like many taxa, the Zetaproteobacteria lack well-defined taxonomic divisions, making it difficult to compare them between studies. We designed ZetaHunter to reproducibly assign 16S rRNA gene sequences to previously described operational taxonomic units (OTUs) based on a curated database. While ZetaHunter can use any given database, we included a curated classification of publicly available Zetaproteobacteria. American Society for Microbiology 2018-08-23 /pmc/articles/PMC6256443/ /pubmed/30533906 http://dx.doi.org/10.1128/MRA.00932-18 Text en Copyright © 2018 McAllister et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Databases and Software
McAllister, Sean M.
Moore, Ryan M.
Chan, Clara S.
ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title_full ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title_fullStr ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title_full_unstemmed ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title_short ZetaHunter, a Reproducible Taxonomic Classification Tool for Tracking the Ecology of the Zetaproteobacteria and Other Poorly Resolved Taxa
title_sort zetahunter, a reproducible taxonomic classification tool for tracking the ecology of the zetaproteobacteria and other poorly resolved taxa
topic Databases and Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256443/
https://www.ncbi.nlm.nih.gov/pubmed/30533906
http://dx.doi.org/10.1128/MRA.00932-18
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