High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall

Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309(T) (= ATCC 49767(T), = NCPPB 3554(T)), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N(50)...

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Detalles Bibliográficos
Autores principales: Gan, Han Ming, Lee, Melvin Vun Jye, Savka, Michael A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256525/
https://www.ncbi.nlm.nih.gov/pubmed/30533933
http://dx.doi.org/10.1128/MRA.01045-18
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author Gan, Han Ming
Lee, Melvin Vun Jye
Savka, Michael A.
author_facet Gan, Han Ming
Lee, Melvin Vun Jye
Savka, Michael A.
author_sort Gan, Han Ming
collection PubMed
description Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309(T) (= ATCC 49767(T), = NCPPB 3554(T)), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N(50) value compared with the previous Illumina-only assembly.
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spelling pubmed-62565252018-12-07 High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall Gan, Han Ming Lee, Melvin Vun Jye Savka, Michael A. Microbiol Resour Announc Genome Sequences Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309(T) (= ATCC 49767(T), = NCPPB 3554(T)), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N(50) value compared with the previous Illumina-only assembly. American Society for Microbiology 2018-09-06 /pmc/articles/PMC6256525/ /pubmed/30533933 http://dx.doi.org/10.1128/MRA.01045-18 Text en Copyright © 2018 Gan et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Gan, Han Ming
Lee, Melvin Vun Jye
Savka, Michael A.
High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title_full High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title_fullStr High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title_full_unstemmed High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title_short High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall
title_sort high-quality draft genome sequence of the type strain of allorhizobium vitis, the primary causal agent of grapevine crown gall
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256525/
https://www.ncbi.nlm.nih.gov/pubmed/30533933
http://dx.doi.org/10.1128/MRA.01045-18
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