Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology

Escherichia coli C is a commonly used strain in the bioprocessing industry, but despite its utility, the publicly available sequence of the E. coli C genome has gaps and 4,180 ambiguous base calls. Here, we present an updated, high-quality, unambiguous genome sequence with no assembly gaps.

Detalles Bibliográficos
Autores principales: Pekar, Jonathan E., Phaneuf, Patrick, Szubin, Richard, Palsson, Bernhard, Feist, Adam, Monk, Jonathan M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2018
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256561/
https://www.ncbi.nlm.nih.gov/pubmed/30533692
http://dx.doi.org/10.1128/MRA.00890-18
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author Pekar, Jonathan E.
Phaneuf, Patrick
Szubin, Richard
Palsson, Bernhard
Feist, Adam
Monk, Jonathan M.
author_facet Pekar, Jonathan E.
Phaneuf, Patrick
Szubin, Richard
Palsson, Bernhard
Feist, Adam
Monk, Jonathan M.
author_sort Pekar, Jonathan E.
collection PubMed
description Escherichia coli C is a commonly used strain in the bioprocessing industry, but despite its utility, the publicly available sequence of the E. coli C genome has gaps and 4,180 ambiguous base calls. Here, we present an updated, high-quality, unambiguous genome sequence with no assembly gaps.
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spelling pubmed-62565612018-12-07 Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology Pekar, Jonathan E. Phaneuf, Patrick Szubin, Richard Palsson, Bernhard Feist, Adam Monk, Jonathan M. Microbiol Resour Announc Genome Sequences Escherichia coli C is a commonly used strain in the bioprocessing industry, but despite its utility, the publicly available sequence of the E. coli C genome has gaps and 4,180 ambiguous base calls. Here, we present an updated, high-quality, unambiguous genome sequence with no assembly gaps. American Society for Microbiology 2018-10-04 /pmc/articles/PMC6256561/ /pubmed/30533692 http://dx.doi.org/10.1128/MRA.00890-18 Text en Copyright © 2018 Pekar et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Pekar, Jonathan E.
Phaneuf, Patrick
Szubin, Richard
Palsson, Bernhard
Feist, Adam
Monk, Jonathan M.
Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title_full Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title_fullStr Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title_full_unstemmed Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title_short Gapless, Unambiguous Genome Sequence for Escherichia coli C, a Workhorse of Industrial Biology
title_sort gapless, unambiguous genome sequence for escherichia coli c, a workhorse of industrial biology
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256561/
https://www.ncbi.nlm.nih.gov/pubmed/30533692
http://dx.doi.org/10.1128/MRA.00890-18
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