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An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to gi...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259472/ https://www.ncbi.nlm.nih.gov/pubmed/21160450 http://dx.doi.org/10.3390/molecules15129214 |
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author | Tarkowski, Petr Floková, Kristýna Václavíková, Kateřina Jaworek, Pavel Raus, Martin Nordström, Anders Novák, Ondřej Doležal, Karel Šebela, Marek Frébortová, Jitka |
author_facet | Tarkowski, Petr Floková, Kristýna Václavíková, Kateřina Jaworek, Pavel Raus, Martin Nordström, Anders Novák, Ondřej Doležal, Karel Šebela, Marek Frébortová, Jitka |
author_sort | Tarkowski, Petr |
collection | PubMed |
description | An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to give rise to a previously-unknown fragment at m/z 69; we suggest that the diagnostic (204-69) transition can be used to monitor the biosynthetic rate of isopentenyladenine. Furthermore, we found that by treating the cytokinin nucleotides with alkaline phosphatase prior to analysis, the sensitivity of the detection process could be increased. In addition, derivatization (propionylation) improved the ESI-MS response by increasing the analytes' hydrophobicity. Indeed, the ESI-MS response of propionylated isopentenyladenosine was about 34% higher than that of its underivatized counterpart. Moreover, the response of the derivatized zeatin ribosides was about 75% higher than that of underivatized zeatin ribosides. Finally, we created a web-based calculator (IZOTOP) that facilitates MS/MS data processing and offer it freely to the research community. |
format | Online Article Text |
id | pubmed-6259472 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62594722018-12-06 An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins Tarkowski, Petr Floková, Kristýna Václavíková, Kateřina Jaworek, Pavel Raus, Martin Nordström, Anders Novák, Ondřej Doležal, Karel Šebela, Marek Frébortová, Jitka Molecules Article An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to give rise to a previously-unknown fragment at m/z 69; we suggest that the diagnostic (204-69) transition can be used to monitor the biosynthetic rate of isopentenyladenine. Furthermore, we found that by treating the cytokinin nucleotides with alkaline phosphatase prior to analysis, the sensitivity of the detection process could be increased. In addition, derivatization (propionylation) improved the ESI-MS response by increasing the analytes' hydrophobicity. Indeed, the ESI-MS response of propionylated isopentenyladenosine was about 34% higher than that of its underivatized counterpart. Moreover, the response of the derivatized zeatin ribosides was about 75% higher than that of underivatized zeatin ribosides. Finally, we created a web-based calculator (IZOTOP) that facilitates MS/MS data processing and offer it freely to the research community. MDPI 2010-12-15 /pmc/articles/PMC6259472/ /pubmed/21160450 http://dx.doi.org/10.3390/molecules15129214 Text en © 2010 by the authors; http://creativecommons.org/licenses/by/3.0/ licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Article Tarkowski, Petr Floková, Kristýna Václavíková, Kateřina Jaworek, Pavel Raus, Martin Nordström, Anders Novák, Ondřej Doležal, Karel Šebela, Marek Frébortová, Jitka An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title | An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title_full | An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title_fullStr | An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title_full_unstemmed | An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title_short | An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins |
title_sort | improved in vivo deuterium labeling method for measuring the biosynthetic rate of cytokinins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259472/ https://www.ncbi.nlm.nih.gov/pubmed/21160450 http://dx.doi.org/10.3390/molecules15129214 |
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