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An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins

An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to gi...

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Autores principales: Tarkowski, Petr, Floková, Kristýna, Václavíková, Kateřina, Jaworek, Pavel, Raus, Martin, Nordström, Anders, Novák, Ondřej, Doležal, Karel, Šebela, Marek, Frébortová, Jitka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259472/
https://www.ncbi.nlm.nih.gov/pubmed/21160450
http://dx.doi.org/10.3390/molecules15129214
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author Tarkowski, Petr
Floková, Kristýna
Václavíková, Kateřina
Jaworek, Pavel
Raus, Martin
Nordström, Anders
Novák, Ondřej
Doležal, Karel
Šebela, Marek
Frébortová, Jitka
author_facet Tarkowski, Petr
Floková, Kristýna
Václavíková, Kateřina
Jaworek, Pavel
Raus, Martin
Nordström, Anders
Novák, Ondřej
Doležal, Karel
Šebela, Marek
Frébortová, Jitka
author_sort Tarkowski, Petr
collection PubMed
description An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to give rise to a previously-unknown fragment at m/z 69; we suggest that the diagnostic (204-69) transition can be used to monitor the biosynthetic rate of isopentenyladenine. Furthermore, we found that by treating the cytokinin nucleotides with alkaline phosphatase prior to analysis, the sensitivity of the detection process could be increased. In addition, derivatization (propionylation) improved the ESI-MS response by increasing the analytes' hydrophobicity. Indeed, the ESI-MS response of propionylated isopentenyladenosine was about 34% higher than that of its underivatized counterpart. Moreover, the response of the derivatized zeatin ribosides was about 75% higher than that of underivatized zeatin ribosides. Finally, we created a web-based calculator (IZOTOP) that facilitates MS/MS data processing and offer it freely to the research community.
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spelling pubmed-62594722018-12-06 An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins Tarkowski, Petr Floková, Kristýna Václavíková, Kateřina Jaworek, Pavel Raus, Martin Nordström, Anders Novák, Ondřej Doležal, Karel Šebela, Marek Frébortová, Jitka Molecules Article An improved method for determining the relative biosynthetic rate of isoprenoid cytokinins has been developed. A set of 11 relevant isoprenoid cytokinins, including zeatin isomers, was separated by ultra performance liquid chromatography in less than 6 min. The iP-type cytokinins were observed to give rise to a previously-unknown fragment at m/z 69; we suggest that the diagnostic (204-69) transition can be used to monitor the biosynthetic rate of isopentenyladenine. Furthermore, we found that by treating the cytokinin nucleotides with alkaline phosphatase prior to analysis, the sensitivity of the detection process could be increased. In addition, derivatization (propionylation) improved the ESI-MS response by increasing the analytes' hydrophobicity. Indeed, the ESI-MS response of propionylated isopentenyladenosine was about 34% higher than that of its underivatized counterpart. Moreover, the response of the derivatized zeatin ribosides was about 75% higher than that of underivatized zeatin ribosides. Finally, we created a web-based calculator (IZOTOP) that facilitates MS/MS data processing and offer it freely to the research community. MDPI 2010-12-15 /pmc/articles/PMC6259472/ /pubmed/21160450 http://dx.doi.org/10.3390/molecules15129214 Text en © 2010 by the authors; http://creativecommons.org/licenses/by/3.0/ licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Tarkowski, Petr
Floková, Kristýna
Václavíková, Kateřina
Jaworek, Pavel
Raus, Martin
Nordström, Anders
Novák, Ondřej
Doležal, Karel
Šebela, Marek
Frébortová, Jitka
An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title_full An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title_fullStr An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title_full_unstemmed An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title_short An Improved in Vivo Deuterium Labeling Method for Measuring the Biosynthetic Rate of Cytokinins
title_sort improved in vivo deuterium labeling method for measuring the biosynthetic rate of cytokinins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259472/
https://www.ncbi.nlm.nih.gov/pubmed/21160450
http://dx.doi.org/10.3390/molecules15129214
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