Cargando…
dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions
BACKGROUND: Protein-protein interactions (PPIs) play important roles in biological functions. Studies of the effects of mutants on protein interactions can provide further understanding of PPIs. Currently, many databases collect experimental mutants to assess protein interactions, but most of these...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6260753/ https://www.ncbi.nlm.nih.gov/pubmed/30482172 http://dx.doi.org/10.1186/s12859-018-2493-7 |
_version_ | 1783374864380329984 |
---|---|
author | Liu, Quanya Chen, Peng Wang, Bing Zhang, Jun Li, Jinyan |
author_facet | Liu, Quanya Chen, Peng Wang, Bing Zhang, Jun Li, Jinyan |
author_sort | Liu, Quanya |
collection | PubMed |
description | BACKGROUND: Protein-protein interactions (PPIs) play important roles in biological functions. Studies of the effects of mutants on protein interactions can provide further understanding of PPIs. Currently, many databases collect experimental mutants to assess protein interactions, but most of these databases are old and have not been updated for several years. RESULTS: To address this issue, we manually curated a kinetic and thermodynamic database of mutant protein interactions (dbMPIKT) that is freely accessible at our website. This database contains 5291 mutants in protein interactions collected from previous databases and the literature published within the last three years. Furthermore, some data analysis, such as mutation number, mutation type, protein pair source and network map construction, can be performed online. CONCLUSION: Our work can promote the study on PPIs, and novel information can be mined from the new database. Our database is available in http://DeepLearner.ahu.edu.cn/web/dbMPIKT/ for use by all, including both academics and non-academics. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2493-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6260753 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-62607532018-12-10 dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions Liu, Quanya Chen, Peng Wang, Bing Zhang, Jun Li, Jinyan BMC Bioinformatics Database BACKGROUND: Protein-protein interactions (PPIs) play important roles in biological functions. Studies of the effects of mutants on protein interactions can provide further understanding of PPIs. Currently, many databases collect experimental mutants to assess protein interactions, but most of these databases are old and have not been updated for several years. RESULTS: To address this issue, we manually curated a kinetic and thermodynamic database of mutant protein interactions (dbMPIKT) that is freely accessible at our website. This database contains 5291 mutants in protein interactions collected from previous databases and the literature published within the last three years. Furthermore, some data analysis, such as mutation number, mutation type, protein pair source and network map construction, can be performed online. CONCLUSION: Our work can promote the study on PPIs, and novel information can be mined from the new database. Our database is available in http://DeepLearner.ahu.edu.cn/web/dbMPIKT/ for use by all, including both academics and non-academics. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2493-7) contains supplementary material, which is available to authorized users. BioMed Central 2018-11-27 /pmc/articles/PMC6260753/ /pubmed/30482172 http://dx.doi.org/10.1186/s12859-018-2493-7 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Database Liu, Quanya Chen, Peng Wang, Bing Zhang, Jun Li, Jinyan dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title | dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title_full | dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title_fullStr | dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title_full_unstemmed | dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title_short | dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions |
title_sort | dbmpikt: a database of kinetic and thermodynamic mutant protein interactions |
topic | Database |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6260753/ https://www.ncbi.nlm.nih.gov/pubmed/30482172 http://dx.doi.org/10.1186/s12859-018-2493-7 |
work_keys_str_mv | AT liuquanya dbmpiktadatabaseofkineticandthermodynamicmutantproteininteractions AT chenpeng dbmpiktadatabaseofkineticandthermodynamicmutantproteininteractions AT wangbing dbmpiktadatabaseofkineticandthermodynamicmutantproteininteractions AT zhangjun dbmpiktadatabaseofkineticandthermodynamicmutantproteininteractions AT lijinyan dbmpiktadatabaseofkineticandthermodynamicmutantproteininteractions |