Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection

This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary...

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Autores principales: Abdelrahman, Mostafa, Mitoma, Mai, Ikeuchi, Takao, Mori, Mitsutaka, Murakami, Kyoko, Ozaki, Yukio, Matsumoto, Masaru, Uragami, Atsuko, Kanno, Akira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Agricultural and Biological Science
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6262200/
https://www.ncbi.nlm.nih.gov/pubmed/30533460
http://dx.doi.org/10.1016/j.dib.2018.11.034
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author Abdelrahman, Mostafa
Mitoma, Mai
Ikeuchi, Takao
Mori, Mitsutaka
Murakami, Kyoko
Ozaki, Yukio
Matsumoto, Masaru
Uragami, Atsuko
Kanno, Akira
author_facet Abdelrahman, Mostafa
Mitoma, Mai
Ikeuchi, Takao
Mori, Mitsutaka
Murakami, Kyoko
Ozaki, Yukio
Matsumoto, Masaru
Uragami, Atsuko
Kanno, Akira
author_sort Abdelrahman, Mostafa
collection PubMed
description This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis.
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spelling pubmed-62622002018-12-07 Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection Abdelrahman, Mostafa Mitoma, Mai Ikeuchi, Takao Mori, Mitsutaka Murakami, Kyoko Ozaki, Yukio Matsumoto, Masaru Uragami, Atsuko Kanno, Akira Data Brief Agricultural and Biological Science This data article reports de novo transcriptome analysis of resistant wild Asparagus kiusianus and susceptible A. officinalis plants 24 and 48 h post-inoculation (24 and 48 hpi) with Phomopsis asparagi. Differential gene expression (DGE) analysis demonstrated that several genes involved in secondary metabolites and plant-pathogen interactions are up-regulated in resistant wild A. kiusianus relative to susceptible A. officinalis. The assembled contig sequences generated in this study were used to search single nucleotide polymorphism (SNP) and insertion/deletion (InDel) distribution in A. kiusianus and A. officinalis plants. SNP and InDel data developed from this transcriptome analysis will be used to generate a high-density linkage map to facilitate further development of molecular marker-assisted selection in A. officinalis. Elsevier 2018-11-13 /pmc/articles/PMC6262200/ /pubmed/30533460 http://dx.doi.org/10.1016/j.dib.2018.11.034 Text en © 2018 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Abdelrahman, Mostafa
Mitoma, Mai
Ikeuchi, Takao
Mori, Mitsutaka
Murakami, Kyoko
Ozaki, Yukio
Matsumoto, Masaru
Uragami, Atsuko
Kanno, Akira
Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title_full Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title_fullStr Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title_full_unstemmed Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title_short Differential gene expression analysis and SNP/InDel marker discovery in resistant wild Asparagus kiusianus and susceptible A. officinalis in response to Phomopsis asparagi infection
title_sort differential gene expression analysis and snp/indel marker discovery in resistant wild asparagus kiusianus and susceptible a. officinalis in response to phomopsis asparagi infection
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6262200/
https://www.ncbi.nlm.nih.gov/pubmed/30533460
http://dx.doi.org/10.1016/j.dib.2018.11.034
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