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Characterization of the Escherichia coli Virulent Myophage ST32

The virulent phage ST32 that infects the Escherichia coli strain ST130 was isolated from a wastewater sample in China and analyzed. Morphological observations showed that phage ST32 belongs to the Myoviridae family, as it has an icosahedral capsid and long contractile tail. Host range analysis showe...

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Autores principales: Liu, Honghui, Geagea, Hany, Rousseau, Geneviève M., Labrie, Simon J., Tremblay, Denise M., Liu, Xinchun, Moineau, Sylvain
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6266442/
https://www.ncbi.nlm.nih.gov/pubmed/30405057
http://dx.doi.org/10.3390/v10110616
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author Liu, Honghui
Geagea, Hany
Rousseau, Geneviève M.
Labrie, Simon J.
Tremblay, Denise M.
Liu, Xinchun
Moineau, Sylvain
author_facet Liu, Honghui
Geagea, Hany
Rousseau, Geneviève M.
Labrie, Simon J.
Tremblay, Denise M.
Liu, Xinchun
Moineau, Sylvain
author_sort Liu, Honghui
collection PubMed
description The virulent phage ST32 that infects the Escherichia coli strain ST130 was isolated from a wastewater sample in China and analyzed. Morphological observations showed that phage ST32 belongs to the Myoviridae family, as it has an icosahedral capsid and long contractile tail. Host range analysis showed that it exhibits a broad range of hosts including non-pathogenic and pathogenic E. coli strains. Interestingly, phage ST32 had a much larger burst size when amplified at 20 °C as compared to 30 °C or 37 °C. Its double-stranded DNA genome was sequenced and found to contain 53,092 bp with a GC content of 44.14%. Seventy-nine open reading frames (ORFs) were identified and annotated as well as a tRNA-Arg. Only nineteen ORFs were assigned putative functions. A phylogenetic tree using the large terminase subunit revealed a close relatedness with four unclassified Myoviridae phages. A comparative genomic analysis of these phages showed that the Enterobacteria phage phiEcoM-GJ1 is the closest relative to ST32 and shares the same new branch in the phylogenetic tree. Still, these two phages share only 47 of 79 ORFs with more than 90% identity. Phage ST32 has unique characteristics that make it a potential biological control agent under specific conditions.
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spelling pubmed-62664422018-12-07 Characterization of the Escherichia coli Virulent Myophage ST32 Liu, Honghui Geagea, Hany Rousseau, Geneviève M. Labrie, Simon J. Tremblay, Denise M. Liu, Xinchun Moineau, Sylvain Viruses Article The virulent phage ST32 that infects the Escherichia coli strain ST130 was isolated from a wastewater sample in China and analyzed. Morphological observations showed that phage ST32 belongs to the Myoviridae family, as it has an icosahedral capsid and long contractile tail. Host range analysis showed that it exhibits a broad range of hosts including non-pathogenic and pathogenic E. coli strains. Interestingly, phage ST32 had a much larger burst size when amplified at 20 °C as compared to 30 °C or 37 °C. Its double-stranded DNA genome was sequenced and found to contain 53,092 bp with a GC content of 44.14%. Seventy-nine open reading frames (ORFs) were identified and annotated as well as a tRNA-Arg. Only nineteen ORFs were assigned putative functions. A phylogenetic tree using the large terminase subunit revealed a close relatedness with four unclassified Myoviridae phages. A comparative genomic analysis of these phages showed that the Enterobacteria phage phiEcoM-GJ1 is the closest relative to ST32 and shares the same new branch in the phylogenetic tree. Still, these two phages share only 47 of 79 ORFs with more than 90% identity. Phage ST32 has unique characteristics that make it a potential biological control agent under specific conditions. MDPI 2018-11-07 /pmc/articles/PMC6266442/ /pubmed/30405057 http://dx.doi.org/10.3390/v10110616 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Honghui
Geagea, Hany
Rousseau, Geneviève M.
Labrie, Simon J.
Tremblay, Denise M.
Liu, Xinchun
Moineau, Sylvain
Characterization of the Escherichia coli Virulent Myophage ST32
title Characterization of the Escherichia coli Virulent Myophage ST32
title_full Characterization of the Escherichia coli Virulent Myophage ST32
title_fullStr Characterization of the Escherichia coli Virulent Myophage ST32
title_full_unstemmed Characterization of the Escherichia coli Virulent Myophage ST32
title_short Characterization of the Escherichia coli Virulent Myophage ST32
title_sort characterization of the escherichia coli virulent myophage st32
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6266442/
https://www.ncbi.nlm.nih.gov/pubmed/30405057
http://dx.doi.org/10.3390/v10110616
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