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Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’
Recently, we classified the oceans into 30 biogeographic realms based on species’ endemicity. Castro-Insua et al. criticize the choices of dissimilarity coefficients and clustering approaches used in our paper, and reanalyse the data using alternative techniques. Here, we explain how the approaches...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269425/ https://www.ncbi.nlm.nih.gov/pubmed/30504796 http://dx.doi.org/10.1038/s41467-018-07252-4 |
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author | Costello, Mark J. Tsai, Peter Cheung, Alan Kwok Lun Basher, Zeenatul Chaudhary, Chhaya |
author_facet | Costello, Mark J. Tsai, Peter Cheung, Alan Kwok Lun Basher, Zeenatul Chaudhary, Chhaya |
author_sort | Costello, Mark J. |
collection | PubMed |
description | Recently, we classified the oceans into 30 biogeographic realms based on species’ endemicity. Castro-Insua et al. criticize the choices of dissimilarity coefficients and clustering approaches used in our paper, and reanalyse the data using alternative techniques. Here, we explain how the approaches used in our original paper yield results in line with existing biogeographical knowledge and are robust to alternative methods of analysis. We also repeat the analysis using several similarity coefficients and clustering algorithms, and a neural network theory method. Although each combination of methods produces outputs differing in detail, the overall pattern of realms is similar. The coarse nature of the present boundaries of the realms reflects the limited field data but may be improved with additional data and mapping to environmental variables. |
format | Online Article Text |
id | pubmed-6269425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62694252018-12-03 Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ Costello, Mark J. Tsai, Peter Cheung, Alan Kwok Lun Basher, Zeenatul Chaudhary, Chhaya Nat Commun Correspondence Recently, we classified the oceans into 30 biogeographic realms based on species’ endemicity. Castro-Insua et al. criticize the choices of dissimilarity coefficients and clustering approaches used in our paper, and reanalyse the data using alternative techniques. Here, we explain how the approaches used in our original paper yield results in line with existing biogeographical knowledge and are robust to alternative methods of analysis. We also repeat the analysis using several similarity coefficients and clustering algorithms, and a neural network theory method. Although each combination of methods produces outputs differing in detail, the overall pattern of realms is similar. The coarse nature of the present boundaries of the realms reflects the limited field data but may be improved with additional data and mapping to environmental variables. Nature Publishing Group UK 2018-11-30 /pmc/articles/PMC6269425/ /pubmed/30504796 http://dx.doi.org/10.1038/s41467-018-07252-4 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Correspondence Costello, Mark J. Tsai, Peter Cheung, Alan Kwok Lun Basher, Zeenatul Chaudhary, Chhaya Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title | Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title_full | Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title_fullStr | Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title_full_unstemmed | Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title_short | Reply to ‘Dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
title_sort | reply to ‘dissimilarity measures affected by richness differences yield biased delimitations of biogeographic realms’ |
topic | Correspondence |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269425/ https://www.ncbi.nlm.nih.gov/pubmed/30504796 http://dx.doi.org/10.1038/s41467-018-07252-4 |
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