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Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy

Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful tool that has enabled experimentalists to characterize molecular dynamics and kinetics spanning a wide range of time-scales from picoseconds to days. This review focuses on addressing the previously inaccessible supra-τ(c) window (defined a...

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Autores principales: Ban, David, Sabo, T. Michael, Griesinger, Christian, Lee, Donghan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6270068/
https://www.ncbi.nlm.nih.gov/pubmed/24077173
http://dx.doi.org/10.3390/molecules181011904
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author Ban, David
Sabo, T. Michael
Griesinger, Christian
Lee, Donghan
author_facet Ban, David
Sabo, T. Michael
Griesinger, Christian
Lee, Donghan
author_sort Ban, David
collection PubMed
description Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful tool that has enabled experimentalists to characterize molecular dynamics and kinetics spanning a wide range of time-scales from picoseconds to days. This review focuses on addressing the previously inaccessible supra-τ(c) window (defined as τ(c) < supra-τ(c) < 40 μs; in which τ(c) is the overall tumbling time of a molecule) from the perspective of local inter-nuclear vector dynamics extracted from residual dipolar couplings (RDCs) and from the perspective of conformational exchange captured by relaxation dispersion measurements (RD). The goal of the first section is to present a detailed analysis of how to extract protein dynamics encoded in RDCs and how to relate this information to protein functionality within the previously inaccessible supra-τ(c) window. In the second section, the current state of the art for RD is analyzed, as well as the considerable progress toward pushing the sensitivity of RD further into the supra-τ(c) scale by up to a factor of two (motion up to 25 μs). From the data obtained with these techniques and methodology, the importance of the supra-τ(c) scale for protein function and molecular recognition is becoming increasingly clearer as the connection between motion on the supra-τ(c) scale and protein functionality from the experimental side is further strengthened with results from molecular dynamics simulations.
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spelling pubmed-62700682018-12-18 Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy Ban, David Sabo, T. Michael Griesinger, Christian Lee, Donghan Molecules Review Nuclear Magnetic Resonance (NMR) spectroscopy is a powerful tool that has enabled experimentalists to characterize molecular dynamics and kinetics spanning a wide range of time-scales from picoseconds to days. This review focuses on addressing the previously inaccessible supra-τ(c) window (defined as τ(c) < supra-τ(c) < 40 μs; in which τ(c) is the overall tumbling time of a molecule) from the perspective of local inter-nuclear vector dynamics extracted from residual dipolar couplings (RDCs) and from the perspective of conformational exchange captured by relaxation dispersion measurements (RD). The goal of the first section is to present a detailed analysis of how to extract protein dynamics encoded in RDCs and how to relate this information to protein functionality within the previously inaccessible supra-τ(c) window. In the second section, the current state of the art for RD is analyzed, as well as the considerable progress toward pushing the sensitivity of RD further into the supra-τ(c) scale by up to a factor of two (motion up to 25 μs). From the data obtained with these techniques and methodology, the importance of the supra-τ(c) scale for protein function and molecular recognition is becoming increasingly clearer as the connection between motion on the supra-τ(c) scale and protein functionality from the experimental side is further strengthened with results from molecular dynamics simulations. MDPI 2013-09-26 /pmc/articles/PMC6270068/ /pubmed/24077173 http://dx.doi.org/10.3390/molecules181011904 Text en © 2013 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Review
Ban, David
Sabo, T. Michael
Griesinger, Christian
Lee, Donghan
Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title_full Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title_fullStr Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title_full_unstemmed Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title_short Measuring Dynamic and Kinetic Information in the Previously Inaccessible Supra-τ(c) Window of Nanoseconds to Microseconds by Solution NMR Spectroscopy
title_sort measuring dynamic and kinetic information in the previously inaccessible supra-τ(c) window of nanoseconds to microseconds by solution nmr spectroscopy
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6270068/
https://www.ncbi.nlm.nih.gov/pubmed/24077173
http://dx.doi.org/10.3390/molecules181011904
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