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A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma
Long noncoding RNAs (lncRNA) are reported to be potential cancer biomarkers. This study aims to find new lncRNA biomarker relevant to lung adenocarcinoma. Gene expression profile and clinical data of lung adenocarcinoma and lung squamous cell carcinoma patients were downloaded from the UCSC Xena dat...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272079/ https://www.ncbi.nlm.nih.gov/pubmed/30290038 http://dx.doi.org/10.1111/cas.13822 |
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author | Liao, Meijian Liu, Qing Li, Bing Liao, Weijie Xie, Weidong Zhang, Yaou |
author_facet | Liao, Meijian Liu, Qing Li, Bing Liao, Weijie Xie, Weidong Zhang, Yaou |
author_sort | Liao, Meijian |
collection | PubMed |
description | Long noncoding RNAs (lncRNA) are reported to be potential cancer biomarkers. This study aims to find new lncRNA biomarker relevant to lung adenocarcinoma. Gene expression profile and clinical data of lung adenocarcinoma and lung squamous cell carcinoma patients were downloaded from the UCSC Xena database. These data were analyzed to identify potential lncRNA prognostic biomarkers, and the candidate lncRNAs were analyzed and verified with association analysis, meta‐analysis, survival analysis, gene ontology analysis, gene set enrichment analysis, and other statistical methods. A group of 5 lncRNAs was identified from the 1965 differentially expressed (fold‐change >2) genes. Four of these 5 lncRNAs were expressed at a lower level in lung adenocarcinoma tissues and the other one at a higher level (P < .0001). A risk score model was constructed using a linear combination of the expression levels of these lncRNAs. High‐risk patients showed poorer overall survival (hazard ratio [HR] = 2.14; 95% confidence interval [CI], 1.67‐3.06, P < .0001), disease‐free survival (HR = 1.84; 95% CI, 1.26‐2.35, P = .0007), and recurrence‐free survival (HR = 1.51; 95% CI, 1.02‐2.40, P = .04). The 5‐fold cross‐validation and subsequent meta‐analysis further verified that patients in the low‐risk group had better survival (95% CI, 0.74‐1.79, Z = 4.72, P < .00001). Furthermore, both univariate and multivariate Cox regression analyses revealed that the prognostic value of these 5 lncRNAs was independent of other clinical prognostic factors. Further analysis indicated that these 5 lncRNAs might be associated with tumor metastasis. Taken together, our study suggests new prognostic lncRNA biomarkers for lung adenocarcinoma. |
format | Online Article Text |
id | pubmed-6272079 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-62720792018-12-05 A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma Liao, Meijian Liu, Qing Li, Bing Liao, Weijie Xie, Weidong Zhang, Yaou Cancer Sci Original Articles Long noncoding RNAs (lncRNA) are reported to be potential cancer biomarkers. This study aims to find new lncRNA biomarker relevant to lung adenocarcinoma. Gene expression profile and clinical data of lung adenocarcinoma and lung squamous cell carcinoma patients were downloaded from the UCSC Xena database. These data were analyzed to identify potential lncRNA prognostic biomarkers, and the candidate lncRNAs were analyzed and verified with association analysis, meta‐analysis, survival analysis, gene ontology analysis, gene set enrichment analysis, and other statistical methods. A group of 5 lncRNAs was identified from the 1965 differentially expressed (fold‐change >2) genes. Four of these 5 lncRNAs were expressed at a lower level in lung adenocarcinoma tissues and the other one at a higher level (P < .0001). A risk score model was constructed using a linear combination of the expression levels of these lncRNAs. High‐risk patients showed poorer overall survival (hazard ratio [HR] = 2.14; 95% confidence interval [CI], 1.67‐3.06, P < .0001), disease‐free survival (HR = 1.84; 95% CI, 1.26‐2.35, P = .0007), and recurrence‐free survival (HR = 1.51; 95% CI, 1.02‐2.40, P = .04). The 5‐fold cross‐validation and subsequent meta‐analysis further verified that patients in the low‐risk group had better survival (95% CI, 0.74‐1.79, Z = 4.72, P < .00001). Furthermore, both univariate and multivariate Cox regression analyses revealed that the prognostic value of these 5 lncRNAs was independent of other clinical prognostic factors. Further analysis indicated that these 5 lncRNAs might be associated with tumor metastasis. Taken together, our study suggests new prognostic lncRNA biomarkers for lung adenocarcinoma. John Wiley and Sons Inc. 2018-11-04 2018-12 /pmc/articles/PMC6272079/ /pubmed/30290038 http://dx.doi.org/10.1111/cas.13822 Text en © 2018 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Articles Liao, Meijian Liu, Qing Li, Bing Liao, Weijie Xie, Weidong Zhang, Yaou A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title | A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title_full | A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title_fullStr | A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title_full_unstemmed | A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title_short | A group of long noncoding RNAs identified by data mining can predict the prognosis of lung adenocarcinoma |
title_sort | group of long noncoding rnas identified by data mining can predict the prognosis of lung adenocarcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272079/ https://www.ncbi.nlm.nih.gov/pubmed/30290038 http://dx.doi.org/10.1111/cas.13822 |
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